NMRpipe Yahoo group Re: nmrDraw peak table format question - BioNMR

BioNMR

NMR aggregator & online community since 2003

BioNMR

Learn or help to learn NMR - get free NMR books!

Ask NMR questions!

Earn NMR points

Redeem NMR points

Vote for NMR papers

Ask to aggregate a site

Our Linkedin group

		BioNMR > NMR community > News from other NMR forums
[NMRpipe Yahoo group] Re: nmrDraw peak table format question

Pulse sequences

Software forums

Webservers

NMR processing:

NMR assignment:

Backbone:

Side-chains:

UNIO ATNOS-Ascan

NOEs:

UNIO ATNOS-Candid

Structure from NMR restraints:

Ab initio:

UNIO ATNOS-Candid

Fragment-based:

BMRB CS-Rosetta

Rosetta-NMR (Robetta)

Template-based:

Refinement:

Structure from chemical shifts:

Fragment-based:

WeNMR CS-Rosetta

BMRB CS-Rosetta

Homology-based:

Torsion angles from chemical shifts:

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

MICS caps, β-turns

Flexibility from chemical shifts:

Interactions from chemical shifts:

Chemical shifts re-referencing:

UNIO Shiftinspector

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

Resolution-by-Proxy

SAVES2 or SAVES4

Ramachandran Plot

Quality Control Check

NMR spectrum prediction:

Flexibility from structure:

Molecular dynamics:

Chemical shifts prediction:

From structure:

CH3shift- Methyl

ArShift- Aromatic

CheShift-2- Cα

From sequence:

Disordered proteins:

Format conversion & validation:

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

Protein solubility:

Isotope labeling:

Solid-state NMR:

Reply

Search this Thread

Rate Thread

#1

Old

06-04-2011, 12:29 AM

NMRpipe Yahoo group news NMRpipe Yahoo group news is offline

NMRpipe Yahoo group news is offline

Senior Member

Join Date: Aug 2010

Posts: 443

NMR Credits: 0

NMR Points: 0

Downloads: 0

Uploads: 0

Default

Re: nmrDraw peak table format question

Re: nmrDraw peak table format question

Dear Dr Fitzkee, Thanks for your kind suggestion! I tried your script but it did not work on my redhat. I guess the ass.tab in the script is an nmrDraw format

More...

Reply With Quote

Did you find this post helpful?

|

Reply

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Peak height versus peak volume Given a standard NOESY-based protein structure determination: Does anyone have any information on the benefits of measuring peak intensity by a volume integration method rather than simply measuring the peak height. Obviously integration is theoretically more accurate, but does it make any difference to the quality of the structures produced? especially if peak lineshapes are comparable? I was hoping to find some study comparing structures produced by both methods..... I'm also curious about the benefits of distance-calbrating NOEs to a curve rather than simply putting restraints...	paul	NMR Questions and Answers	3	09-15-2015 07:48 PM
[NMRpipe Yahoo group] Cannot execute the spript to convert varian format to nmrpipe format Cannot execute the spript to convert varian format to nmrpipe format Dear nmrpipe group, I have a group of data with Varian format (fid) and want to convert them to NMRPipe format (test.fid) I was able to read all data in varian More...	NMRpipe Yahoo group news	News from other NMR forums	0	09-29-2011 07:36 PM
[NMRpipe Yahoo group] Re: nmrDraw peak table format question Re: nmrDraw peak table format question Dear Dr Fitzkee, Thanks for your kind suggestion! I tried your script but it did not work on my redhat. I guess the ass.tab in the script is an nmrDraw format More...	NMRpipe Yahoo group news	News from other NMR forums	0	06-04-2011 12:30 AM
[NMRpipe Yahoo group] Re: nmrDraw peak table format question Re: nmrDraw peak table format question Jia, Yes and no. I have written several scripts to do this over the years, and I can share some of the simpler versions that you may be interested in. More...	NMRpipe Yahoo group news	News from other NMR forums	0	06-02-2011 12:00 PM
[NMRpipe Yahoo group] nmrDraw peak table format question nmrDraw peak table format question Dear all, I am wondering if there is any possibility to convert Sparky peak list into nmrDraw peak table? I have realized that it is required for the nmrDraw More...	NMRpipe Yahoo group news	News from other NMR forums	0	06-02-2011 12:00 PM
[NMRwiki tweet] nmrwiki: Help explain missing peak in HMBC? Thanks! #nmrhttp://qa.nmrwiki.org/question/225/ nmrwiki: Help explain missing peak in HMBC? Thanks! #nmrhttp://qa.nmrwiki.org/question/225/ nmrwiki: Help explain missing peak in HMBC? Thanks! #nmrhttp://qa.nmrwiki.org/question/225/ Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	02-04-2011 07:12 PM
[NMR paper] Automated peak picking and peak integration in macromolecular NMR spectra using AUTOP Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY. Related Articles Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY. J Magn Reson. 1998 Dec;135(2):288-97 Authors: Koradi R, Billeter M, Engeli M, Güntert P, Wüthrich K A new approach for automated peak picking of multidimensional protein NMR spectra with strong overlap is introduced, which makes use of the program AUTOPSY (automated peak picking for NMR spectroscopy). The main elements of this program are a novel...	nmrlearner	Journal club	0	11-17-2010 11:15 PM
[NMRwiki tweet] nmrwiki: Do you know how to create #NMR fids in raw format - either @bruker , varian nmrwiki: Do you know how to create #NMR fids in raw format - either @bruker , varian or jeol? http://qa.nmrwiki.org/question/150/ nmrwiki: Do you know how to create #NMR fids in raw format - either @bruker , varian or jeol? http://qa.nmrwiki.org/question/150/ Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	08-22-2010 01:49 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off