NMRpipe Yahoo group Re: Issues processing 2D SoFast HMQC - BioNMR

BioNMR

NMR aggregator & online community since 2003

BioNMR

Learn or help to learn NMR - get free NMR books!

Ask NMR questions!

Earn NMR points

Redeem NMR points

Vote for NMR papers

Ask to aggregate a site

Our Linkedin group

		BioNMR > NMR community > News from other NMR forums
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC

Pulse sequences

Software forums

Webservers

NMR processing:

NMR assignment:

Backbone:

Side-chains:

UNIO ATNOS-Ascan

NOEs:

UNIO ATNOS-Candid

Structure from NMR restraints:

Ab initio:

UNIO ATNOS-Candid

Fragment-based:

BMRB CS-Rosetta

Rosetta-NMR (Robetta)

Template-based:

Refinement:

Structure from chemical shifts:

Fragment-based:

WeNMR CS-Rosetta

BMRB CS-Rosetta

Homology-based:

Torsion angles from chemical shifts:

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

MICS caps, β-turns

Flexibility from chemical shifts:

Interactions from chemical shifts:

Chemical shifts re-referencing:

UNIO Shiftinspector

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

Resolution-by-Proxy

SAVES2 or SAVES4

Ramachandran Plot

Quality Control Check

NMR spectrum prediction:

Flexibility from structure:

Molecular dynamics:

Chemical shifts prediction:

From structure:

CH3shift- Methyl

ArShift- Aromatic

CheShift-2- Cα

From sequence:

Disordered proteins:

Format conversion & validation:

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

Protein solubility:

Isotope labeling:

Solid-state NMR:

Reply

Search this Thread

Rate Thread

#1

Old

09-05-2012, 03:35 AM

NMRpipe Yahoo group news NMRpipe Yahoo group news is offline

NMRpipe Yahoo group news is offline

Senior Member

Join Date: Aug 2010

Posts: 443

NMR Credits: 0

NMR Points: 0

Downloads: 0

Uploads: 0

Default

Re: Issues processing 2D SoFast HMQC

Re: Issues processing 2D SoFast HMQC

Hi Jana, I'm sorry, I should have been more clear in my post. I do use States-TPPI when processing the SoFast data. (I have also tried a plethora of other

More...

Reply With Quote

Did you find this post helpful?

|

Reply

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC Re: Issues processing 2D SoFast HMQC Hi Nichole, Iam extremely sorry about the previous post. if you have mistakenly used nd0=2 for sfhmqc, try changing this line in the nmrPipe script from -xSW More...	NMRpipe Yahoo group news	News from other NMR forums	0	09-05-2012 03:35 AM
[NMRpipe Yahoo group] Re: Issues processing 2D SoFast HMQC Re: Issues processing 2D SoFast HMQC Hi Nicole, Pls check your sfhmqc experimental parameter 'nd0' ( using the command 'ased'). For sfhmqc the nd0 should be 1( for conventional HSQC nd0=2 ). If More...	NMRpipe Yahoo group news	News from other NMR forums	0	09-05-2012 03:35 AM
[Question from NMRWiki Q&A forum] 1H-119Sn HMBC or HMQC 1H-119Sn HMBC or HMQC Dear experts,I want to run 1H-119Sn HMBC or HMQC, but I don't know the name of pulse program in Bruker.Do you know the name and any details regarding these measurements?Warmly thanks, Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	06-24-2012 03:21 PM
[NMRpipe Yahoo group] 3d c13 hmqc noesy 3D C13 HMQC NOESY Hello! I am looking for a script model for 3D C13 HMQC NOESY processing. It's my first 3D experiment and I need a starting point. Thanks in advance. More...	NMRpipe Yahoo group news	News from other NMR forums	0	02-27-2012 06:56 AM
[NMR Sparky Yahoo group] vnm2ucsf issues vnm2ucsf issues Hello I'm experiencing issues when I run vnmr2ucsf, especially on 2D 1H/15N HSQC spectra. After conversion of my Varian spectra to the ucsf format, all the More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[NMR Sparky Yahoo group] vnm2ucsf issues vnm2ucsf issues Hello I'm experiencing issues when I run vnmr2ucsf, especially on 2D 1H/15N HSQC spectra. After conversion of my Varian spectra to the ucsf format, all the More...	nmrlearner	News from other NMR forums	0	08-30-2011 06:51 AM
[U. of Ottawa NMR Facility Blog] 19f - 13c hmqc 19F - 13C HMQC If one has an NMR spectrometer with hardware capable of synthesizing and amplifying the frequency of 19F from the 1H channel and a broadband NMR probe whose 1H channel can tune down to 19F, then one is able to do 19F - 13C HMQC experiments. The figure below shows an example of a 19F - 13C HMQC spectrum collected on a Bruker AVANCE 500 NMR spectrometer using a 5 mm broadband probe. The fluorine spectrum is plotted on the top and the 13C spectrum is plotted on the side. The panel on the left shows the spectrum optimized for one-bond coupling, while that on the right shows the...	nmrlearner	News from NMR blogs	0	08-21-2010 08:15 PM
15N SOFAST-HMQC to study fast H-D exchange Very Fast Two-Dimensional NMR Spectroscopy for Real-Time Investigation of Dynamic Events in Proteins on the Time Scale of Seconds Paul Schanda and Bernhard Brutscher J. Am. Chem. Soc.; 2005; 127(22) pp 8014 - 8015 http://pubs.acs.org/isubscribe/journals/jacsat/127/i22/figures/ja051306en00001.gif Abstract: We demonstrate for different protein samples that 2D 1H-15N correlation NMR spectra can be recorded in a few seconds of acquisition time using a new band-selective optimized flip-angle short-transient heteronuclear multiple quantum coherence experiment. This has enabled us to...	nmrlearner	Journal club	0	06-21-2005 06:21 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off