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[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra

Pulse sequences

Software forums

Webservers

NMR processing:

NMR assignment:

Backbone:

Side-chains:

UNIO ATNOS-Ascan

NOEs:

UNIO ATNOS-Candid

Structure from NMR restraints:

Ab initio:

UNIO ATNOS-Candid

Fragment-based:

BMRB CS-Rosetta

Rosetta-NMR (Robetta)

Template-based:

Refinement:

Structure from chemical shifts:

Fragment-based:

WeNMR CS-Rosetta

BMRB CS-Rosetta

Homology-based:

Torsion angles from chemical shifts:

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

MICS caps, β-turns

Flexibility from chemical shifts:

Interactions from chemical shifts:

Chemical shifts re-referencing:

UNIO Shiftinspector

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

Resolution-by-Proxy

SAVES2 or SAVES4

Ramachandran Plot

Quality Control Check

NMR spectrum prediction:

Flexibility from structure:

Molecular dynamics:

Chemical shifts prediction:

From structure:

CH3shift- Methyl

ArShift- Aromatic

CheShift-2- Cα

From sequence:

Disordered proteins:

Format conversion & validation:

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

Protein solubility:

Isotope labeling:

Solid-state NMR:

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05-16-2011, 08:22 AM

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Re: extracting spectral regions from 2D spectra

Re: extracting spectral regions from 2D spectra

Hi Aswani, I was thinking that one way to solve your problem may be to turn your spectrum into a pseudo 3D using something like series.com. Then, you may be

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Thread	Thread Starter	Forum	Replies	Last Post
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra Many thanks to Nicholas and Frank. I tried out the steps posted by Frank and they worked perfectly fine with me. By applying minor variations, I could get the More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra Dear Frank, Many thanks for your e-mail and the script. But I am sorry that I could not convey what I wanted to do. Here it is... 1. I have 1H,1H NOESY More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra oops! sorry ... in the script below: "-in test.fid" should be "-in $dirName/test.fid" "-out test.ft2" should be "-out $outName" the corrected script follows More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra oo! There are more than a few problems in the script. For one thing, it seems that many lines have a backslash "\" character at the end when they shouldn't, More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-16-2011 08:22 AM
[NMRpipe Yahoo group] extracting spectral regions from 2D spectra extracting spectral regions from 2D spectra Hello, I have H,H homo-nuclear and hetero-nuclear 2D spectra. I wish to extract regions from these spectra (similar to how we extract strip-plots in 3D data). More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-16-2011 08:22 AM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra Many thanks to Nicholas and Frank. I tried out the steps posted by Frank and they worked perfectly fine with me. By applying minor variations, I could get the More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-12-2011 07:41 PM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra Working with strips from 2D data would indeed be handy, I'll keep it in mind, and adjust the strip scripts accordingly. In the mean time, Nick's suggested More...	NMRpipe Yahoo group news	News from other NMR forums	0	04-15-2011 01:41 PM
[NMRpipe Yahoo group] Re: extracting spectral regions from 2D spectra Re: extracting spectral regions from 2D spectra Dear Frank, Many thanks for your e-mail and the script. But I am sorry that I could not convey what I wanted to do. Here it is... 1. I have 1H,1H NOESY More...	NMRpipe Yahoo group news	News from other NMR forums	0	04-15-2011 01:41 PM

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