CNS Yahoo group Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel

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[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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02-09-2011, 08:23 PM

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Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel

Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel

Fully realizing how ridiculous it is for me to provide any advice on Apple products, but what does getarch returns on this system? I presume that you mean

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[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Update so far, I tested on a 64-bit Mac and didn't get the "Bad CPU type in executable" message. It still didn't install correctly but perhaps I'm getting More...	nmrlearner	News from other NMR forums	0	02-11-2011 08:31 AM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Hi Ben, I'll tinker with the Makefiles per your suggestion and see if I can make some progress. Thanks again ! ... Nate Michals Jr. Systems Administrator More...	nmrlearner	News from other NMR forums	0	02-10-2011 08:25 AM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Hi Nate, ... That looks fine. The hpc.sourceforge.net compilers install to /usr/local/bin, so you can also run 'which gfortran' to ensure that it's picking up More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Thanks Ben and others, here is the update so far, I installed gfortran (and gcc) from hpc.sourceforge.net, verified that they are installed by typing gcc and More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel ... That would explain it, but then this in CNS installation instructions must be incorrect: "A binary installation is available for Intel Macintosh OS X, More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel (I added the list cc: back in for the archives.) Hi Nate, ... So that proves what you already know: you have a Core Duo machine, and those CPUs are 32-bit More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Hi Nate, ... That only produces an error when running as root. The default user privilege on OS X only allows setting the max stacksize to the kernel max More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM
[CNS Yahoo group] Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Re: CNS Solve 1.3, "Bad CPU Type in Executable", OSX 10.6.6, Intel Thank you Kevin and Alex for your suggestions. I tried both solutions (separately and together), but still encounter the same problem. (Bad CPU type in More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM

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