NMR Sparky Yahoo group Moving assignment from CCPN to sparky

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Moving assignment from CCPN to sparky

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-09-2013, 12:18 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Moving assignment from CCPN to sparky

Moving assignment from CCPN to sparky

Dear Sparky users, after assigning a protein in CCPN I want to move the NH/N assignment of my "root" spectrum (HSQC) to Sparky. What does it need for that? *

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky Re: Moving assignment from CCPN to sparky I found the rp function ... nevermind my question. Now I have some referencing problems, but that should be easy to fix. ... -- Martin Ballaschk AG Schmieder More...	nmrlearner	News from other NMR forums	0	02-09-2013 12:18 AM
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky Re: Moving assignment from CCPN to sparky You're welcome. When you open Sparky there should be a "Pointer mode" window that pops up. There are shortcuts for each of the modes using the Function keys on More...	nmrlearner	News from other NMR forums	0	02-09-2013 12:18 AM
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky Re: Moving assignment from CCPN to sparky Hi Kari, thanks for the help. There is some flexibility in the CCPN export routines, and I could easily reverse the order of the column. Now after using "rp" More...	nmrlearner	News from other NMR forums	0	02-09-2013 12:18 AM
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky Re: Moving assignment from CCPN to sparky That peak list looks close to what Sparky will want. The only problems you might have is that Sparky will expect w1 to be 15N and w2 to be 1H, which is more of More...	nmrlearner	News from other NMR forums	0	02-09-2013 12:18 AM
ncIDP-assign: A SPARKY extension for the effective NMR assignment of intrinsically disordered proteins. ncIDP-assign: A SPARKY extension for the effective NMR assignment of intrinsically disordered proteins. ncIDP-assign: A SPARKY extension for the effective NMR assignment of intrinsically disordered proteins. Bioinformatics. 2011 Mar 3; Authors: Tamiola K, Mulder FA SUMMARY: We describe here the ncIDP-assign extension for the popular NMR assignment programme SPARKY, which aids in the sequence-specific resonance assignment of intrinsically disordered proteins (IDPs). The assignment plugin greatly facilitates the effective matching of a set of...	nmrlearner	Journal club	0	03-05-2011 01:02 PM
[NMRwiki tweet] nmrwiki: does moving #nmr probe in and out of the magnet affect shims? http://qa.nmrw nmrwiki: does moving #nmr probe in and out of the magnet affect shims? http://qa.nmrwiki.org/question/155/ nmrwiki: does moving #nmr probe in and out of the magnet affect shims? http://qa.nmrwiki.org/question/155/ Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	08-22-2010 01:49 AM
CCPN Analysis - a hybrid of Sparky, Ansing & more New CCPN program for protein spectra analysis and automatic assignment. http://www.ccpn.ac.uk/ccpnmr/ccpnmr/doc/graphics/analysis_smallMol.jpg Info from the CCPN website: "CcpNmr Analysis is a new analysis program built on top of the CCP Data Model. The program is based partly on the existing ANSIG, written by Per Kraulis, partly on the current Sparky... Analysis will run under both Unix/Linux and Windows. Compared to ANSIG, CcpNmr Analysis includes a completely new graphical user interface, support for automatic assignment, Python as a scripting and macro language, and a number...	nmrlearner	NMR software	0	07-27-2005 04:05 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off