Dear Sparky users, after assigning a protein in CCPN I want to move the NH/N assignment of my "root" spectrum (HSQC) to Sparky. What does it need for that? *
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky
Re: Moving assignment from CCPN to sparky
I found the rp function ... nevermind my question. Now I have some referencing problems, but that should be easy to fix. ... -- Martin Ballaschk AG Schmieder
More...
nmrlearner
News from other NMR forums
0
02-09-2013 12:18 AM
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky
Re: Moving assignment from CCPN to sparky
You're welcome. When you open Sparky there should be a "Pointer mode" window that pops up. There are shortcuts for each of the modes using the Function keys on
More...
nmrlearner
News from other NMR forums
0
02-09-2013 12:18 AM
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky
Re: Moving assignment from CCPN to sparky
Hi Kari, thanks for the help. There is some flexibility in the CCPN export routines, and I could easily reverse the order of the column. Now after using "rp"
More...
nmrlearner
News from other NMR forums
0
02-09-2013 12:18 AM
[NMR Sparky Yahoo group] Re: Moving assignment from CCPN to sparky
Re: Moving assignment from CCPN to sparky
That peak list looks close to what Sparky will want. The only problems you might have is that Sparky will expect w1 to be 15N and w2 to be 1H, which is more of
More...
nmrlearner
News from other NMR forums
0
02-09-2013 12:18 AM
ncIDP-assign: A SPARKY extension for the effective NMR assignment of intrinsically disordered proteins.
ncIDP-assign: A SPARKY extension for the effective NMR assignment of intrinsically disordered proteins.
ncIDP-assign: A SPARKY extension for the effective NMR assignment of intrinsically disordered proteins.
Bioinformatics. 2011 Mar 3;
Authors: Tamiola K, Mulder FA
SUMMARY: We describe here the ncIDP-assign extension for the popular NMR assignment programme SPARKY, which aids in the sequence-specific resonance assignment of intrinsically disordered proteins (IDPs). The assignment plugin greatly facilitates the effective matching of a set of...
CCPN Analysis - a hybrid of Sparky, Ansing & more
New CCPN program for protein spectra analysis and automatic assignment.
http://www.ccpn.ac.uk/ccpnmr/ccpnmr/doc/graphics/analysis_smallMol.jpg
Info from the CCPN website:
"CcpNmr Analysis is a new analysis program built on top of the CCP Data Model. The program is based partly on the existing ANSIG, written by Per Kraulis, partly on the current Sparky... Analysis will run under both Unix/Linux and Windows. Compared to ANSIG, CcpNmr Analysis includes a completely new graphical user interface, support for automatic assignment, Python as a scripting and macro language, and a number...