BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 01-18-2015, 06:22 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,733
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Measurement of very short T2

Measurement of very short T2

Hello,

I'm measuring T2 in paramagnetic materials. These values are very short (0.5-5 ms), and I have to use very short interpulse delays. On Bruker machines standard CPMG sequence looks like this:

d1 p1(90°) [d20 p2(180°) d20]

the number of 180° trains [number of times the sequence in square brackets is repeated] is specified in vc list. I use 12 points, from 8 to 96 pulse trains.

Suppose my d20 is 40 us and my p2 is 20 us.

My questions are:
  1. Should the duration of p2 be included in the calculation of TE? If yes, then in my example, the TE would be 0.1 ms, not 0.08 ms (per loop).
  2. Should I be worried about applying high-power pulses so frequently? In this example, the pulse is applied 20% of the time. What if d20 is 0? This would result in a continuous pulse of up to 96*0.02=1.92 msec. Can this fry the probe? My d1 is at least 100 ms.
Thanks!



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
NMR and MRI related tools and short programs
NMR and MRI related tools and short programs http://www.spectroscopynow.com/common/images/thumbnails/no_img.gifThis article contains a list of NMR and MRI related tools and short programs. More...
nmrlearner Educational web pages 0 10-24-2014 07:18 PM
Short-term postdoctoral position DNP MRI/SRM in Bordeaux
From The DNP-NMR Blog: Short-term postdoctoral position DNP MRI/SRM in Bordeaux From the Ampere Magnetic Resonance List: Postdoctoral position in DNP MR imaging and NMR spectroscopy Centre de Résonance Magnétique des Systèmes Biologiques Bordeaux, France
nmrlearner News from NMR blogs 0 09-20-2014 05:45 AM
Measurements of short distances between trityl spin labels with CW EPR, DQC and PELDOR
From The DNP-NMR Blog: Measurements of short distances between trityl spin labels with CW EPR, DQC and PELDOR This article does not describe any DNP-NMR experiments. However, in the light of biradicals as polarizing agents for DNP experiments it is still very interesting. Especially since trityl radicals have very narrow EPR lines and these biradicals could be more efficient to polarize low-gamma nuclei such as 13C, 29Si or 15N.
nmrlearner News from NMR blogs 0 01-08-2014 11:53 PM
[NMR paper] NMR study of short ?(1-3)-glucans provides insights into the structure and interaction with Dectin-1.
NMR study of short ?(1-3)-glucans provides insights into the structure and interaction with Dectin-1. Related Articles NMR study of short ?(1-3)-glucans provides insights into the structure and interaction with Dectin-1. Glycoconj J. 2013 Nov 29; Authors: Hanashima S, Ikeda A, Tanaka H, Adachi Y, Ohno N, Takahashi T, Yamaguchi Y Abstract ?(1-3)-Glucans, abundant in fungi, have the potential to activate the innate immune response against various pathogens. Although part of the action is exerted through the C-type lectin-like receptor...
nmrlearner Journal club 0 12-03-2013 12:49 PM
Triton X-100 as the “Short-Chain Lipid” Improves the Magnetic Alignment and Stability
Triton X-100 as the “Short-Chain Lipid” Improves the Magnetic Alignment and Stability of Membrane Proteins in Phosphatidylcholine Bilayers for Oriented-Sample Solid-State NMR Spectroscopy Sang Ho Park et al http://pubs.acs.org//appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja1055565/aop/images/medium/ja-2010-055565_0003.gifJournal of the American Chemical Society, Volume 0, Issue 0, Articles ASAP (As Soon As Publishable). Source: Journal of the American Chemical Society
nmrlearner Journal club 0 08-25-2010 03:51 PM
[NMR paper] Decrease in brain choline-containing compounds following a short period of global isc
Decrease in brain choline-containing compounds following a short period of global ischemia in gerbils as detected by 1H NMR spectroscopy in vivo. Related Articles Decrease in brain choline-containing compounds following a short period of global ischemia in gerbils as detected by 1H NMR spectroscopy in vivo. NMR Biomed. 1994 Aug;7(5):231-6 Authors: Kuhmonen J, Sivenius J, Riekkinen PJ, Kauppinen RA Cerebral metabolism was studied in the postischaemic gerbil brain using surface coil 31P and 1H NMR spectroscopy. The ratio of choline-containing...
nmrlearner Journal club 0 08-22-2010 03:29 AM
[NMR paper] Short chain phospholipids in membrane protein crystallization: a 31P-NMR study of col
Short chain phospholipids in membrane protein crystallization: a 31P-NMR study of colloidal properties of dihexanoyl phosphatidylcholine. Related Articles Short chain phospholipids in membrane protein crystallization: a 31P-NMR study of colloidal properties of dihexanoyl phosphatidylcholine. Chem Phys Lipids. 1990 Sep;55(3):351-4 Authors: Eisele JL, Neumann JM, Chachaty C The colloidal features of short chain phospholipids can be deduced from 31P-NMR analysis by comparison with available data on phospholipid aqueous dispersion. In this study...
nmrlearner Journal club 0 08-21-2010 11:04 PM
Molecular model being shown during a short presentation on Nuclear Magnetic Resonance
http://farm3.static.flickr.com/2600/3920568785_37559992c8.jpg Molecular model being shown during a short presentation on Nuclear Magnetic Resonance (NMR) spectroscopy More...
nmrlearner NMR pictures 0 08-18-2010 01:12 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 11:38 AM.


Map