BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-21-2010, 03:29 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Journal club: structural biology of HIV infection (0 replies)

Journal club: structural biology of HIV infection (0 replies)

A recent paper in Science highlights once again the potential of NMR to yield insights into complex molecular recognition events in critical biological processes.

In this case the authors used a combination of X-ray crystallography and NMR to probe the structure of the extracellular terminus of the CCR5 co-receptor which, in concert with human CD4 and HIV gp120, is crucial for viral entry. The authors applied challenging saturation transfer effects to study the structure of a small synthetic peptide in a ternary complex with two large proteins. The structure of the CCR5 epitope was successfully elucidated and provides essential insights into conserved interactions for viral recognition – even at the level of a single nitrogen atom! This important work opens a new and therefore invaluable avenue into the design of new molecules as drugs for AIDS.



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Postoctoral position in Structural Biology
Postoctoral position in Structural Biology UNIVERSITY OF OXFORD DEPARTMENT OF BIOCHEMISTRY Postdoctoral Research Associate in Structural Biology We are seeking to appoint a highly motivated Postdoctoral Research Associate in the laboratory of Dr. Ioannis Vakonakis for studies of proteins involved in centriole assembly. The successful candidate will
nmrlearner Job marketplace 0 01-27-2012 04:34 PM
Structural Biology Widget
Structural Biology Widget Structural Biology Knowledge Base Widget More...
nmrlearner General 0 04-15-2011 01:40 AM
Research Scientist Position in the Cryo-Electron Microscopy Facility at the New York Structural Biol - New York Structural Biology Center - New York, NY, United States
Research Scientist Position in the Cryo-Electron Microscopy Facility at the New York Structural Biol - New York Structural Biology Center - New York, NY, United States The New York Structural Biology Center (NYSBC) seeks an experienced electron microscopist to join the staff of its Cryo-Electron Microscope Facility (http://cryoem.nysbc.org). The NYSBC is shared center that supports state-of-the-art research in cryo-EM, NMR, and X-ray. Cryo-EM facilities include four transmission electron microscopes and a new d... More...
nmrlearner Job marketplace 0 01-26-2011 04:21 AM
Small molecules may prevent ebola infection - PhysOrg.com
<img alt="" height="1" width="1" /> Small molecules may prevent ebola infection PhysOrg.com Exactly how and where these small molecules bind to the virus's protein coat is now being determined through nuclear magnetic resonance spectroscopy, ... and more &raquo; Small molecules may prevent ebola infection - PhysOrg.com More...
nmrlearner Online News 0 01-20-2011 03:28 AM
[NMR paper] An account of NMR in structural biology.
An account of NMR in structural biology. Related Articles An account of NMR in structural biology. Nat Struct Biol. 1997 Oct;4 Suppl:841-4 Authors: Wagner G With the ability to determine atomic resolution structures of biological macromolecules in semi-physiological conditions, nuclear magnetic resonance spectroscopy (NMR) has become an eminent tool in structural biology. NMR provides a means for studying critical biological phenomena including protein structure, dynamics and folding as well as a practical approach to drug design.
nmrlearner Journal club 0 08-22-2010 05:08 PM
[Nature network NMR forum] NMR, Biophysics, or Structural Biology Blogs (3 replies)
NMR, Biophysics, or Structural Biology Blogs (3 replies) Hello All, I get the feeling that most physical/biological science types don’t keep blogs as much as other disciplines, although I would be happy if I am completely mistaken in this. That being said, does anyone have any suggestions of individuals’ or groups’ blogs about NMR specifically, but more broadly about biophysics, or structural biology, or anything along those lines? The only things I have found to follow are Sandwalk , Everyday Scientist , Chemical Musings , and the Disgruntled and Skeptical chemists. All...
nmrlearner News from other NMR forums 0 08-21-2010 03:29 PM
[Nature network NMR forum] Journal club: recombinant RNA expression (0 replies)
Journal club: recombinant RNA expression (0 replies) Recently I was thinking about my RNA project and wishing that I could express RNA in bacteria as is typically done for recombinant proteins. I looked at the July issue of Nature Methods to see a paper describing exactly the technology I was imagining. The authors created plasmids which allow the fusion of a target RNA sequence to a tRNA scaffold which is authenically processed by the cellular machinery and protected from degradation by the intrinsic stability of the tRNA. The potential benefits of this technology for NMR of RNA...
nmrlearner News from other NMR forums 0 08-21-2010 03:29 PM
[Nature network NMR forum] Journal club: structure of the ternary Prp31:15.5K:U4 snRNA complex (1 reply)
Journal club: structure of the ternary Prp31:15.5K:U4 snRNA complex (1 reply) I would like to start the “journal club” section of the NMR forum by presenting my favorite paper from the recent literature. The paper (in this weeks issue of Science) is, in my opinion at least, a perfect example of the ability of NMR to contribute to the structural analysis of a challenging RNA-protein complex I chose this high-impact paper because the combination of biochemistry, NMR, and crystallography on a ternary complex is how I would like to tackle a challenging project that I am...
nmrlearner News from other NMR forums 0 08-21-2010 03:29 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 03:47 PM.


Map