CNS Yahoo group improper angle defination

		BioNMR > NMR community > News from other NMR forums
[CNS Yahoo group] improper angle defination

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-10-2011, 07:38 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

improper angle defination

improper angle defination

Hi, I a new user to CNS. Recently when I am trying to use this program to refine my structure, I have got a problem about the molecular as following. my

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[CNS Yahoo group] improper angle defination improper angle defination Hi, I a new user to CNS. Recently when I am trying to use this program to refine my structure, I have got a problem about the molecular as following. my More...	nmrlearner	News from other NMR forums	0	11-11-2011 08:26 AM
Dihedral angle definition for proteins Dihedral angle definition for proteins This webpage lists the group of atoms that are uder every side-chain dihedral angle for proteins. More...	nmrlearner	General	0	05-27-2011 10:44 PM
[NMR paper] A protein backbone psi and phi angle dependence of 2J(N(i),C alpha(i-1)): the new NMR A protein backbone psi and phi angle dependence of 2J(N(i),C alpha(i-1)): the new NMR experiment and quantum chemical calculations. Related Articles A protein backbone psi and phi angle dependence of 2J(N(i),C alpha(i-1)): the new NMR experiment and quantum chemical calculations. J Biomol NMR. 2005 Feb;31(2):87-95 Authors: Ko?mi?ski W, Zhukov I, Pecul M, Sadlej J A new pulse sequence exploiting double- and zero-quantum evolution of two-spin 15N-13C' coherence is proposed for the accurate measurements of 2J(N(i),C alpha(i-1)) coupling...	nmrlearner	Journal club	0	11-24-2010 11:14 PM
[NMR paper] Refinement of the protein backbone angle psi in NMR structure calculations. Refinement of the protein backbone angle psi in NMR structure calculations. Related Articles Refinement of the protein backbone angle psi in NMR structure calculations. J Biomol NMR. 2000 Jan;16(1):47-58 Authors: Sprangers R, Bottomley MJ, Linge JP, Schultz J, Nilges M, Sattler M Cross-correlated relaxation rates involving the Calpha-Halpha dipolar interaction and the carbonyl (C') chemical shift anisotropy (CSA) have been measured using two complementary 3D experiments. We show that the protein backbone angle psi can be directly refined...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
[NMR paper] Determination of a molecular torsional angle in the metarhodopsin-I photointermediate Determination of a molecular torsional angle in the metarhodopsin-I photointermediate of rhodopsin by double-quantum solid-state NMR. Related Articles Determination of a molecular torsional angle in the metarhodopsin-I photointermediate of rhodopsin by double-quantum solid-state NMR. J Biomol NMR. 2000 Jan;16(1):1-8 Authors: Feng X, Verdegem PJ, Edén M, Sandström D, Lee YK, Bovee-Geurts PH, de Grip WJ, Lugtenburg J, de Groot HJ, Levitt MH We present a solid-state NMR study of metarhodopsin-1, the pre-discharge intermediate of the photochemical...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
[NMR paper] The NMR angle on troponin C. The NMR angle on troponin C. Related Articles The NMR angle on troponin C. Biochem Cell Biol. 1998;76(2-3):302-12 Authors: Gagné SM, Li MX, McKay RT, Sykes BD The calcium-induced structural changes in the skeletal muscle regulatory protein troponin C involve a transition from a closed to an open structure with the concomitant exposure of a large hydrophobic interaction site for target proteins. NMR solution structural studies have served to define this conformational change and elucidate the mechanism of the linkage between calcium binding and...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
[NMR paper] 13C magic angle spinning NMR evidence for a 15,15'-cis configuration of the spheroide 13C magic angle spinning NMR evidence for a 15,15'-cis configuration of the spheroidene in the Rhodobacter sphaeroides photosynthetic reaction center. Related Articles 13C magic angle spinning NMR evidence for a 15,15'-cis configuration of the spheroidene in the Rhodobacter sphaeroides photosynthetic reaction center. Biochemistry. 1992 Dec 15;31(49):12446-50 Authors: de Groot HJ, Gebhard R, van der Hoef I, Hoff AJ, Lugtenburg J, Violette CA, Frank HA The photosynthetic reaction center of Rhodobacter sphaeroides 2.4.1 contains one carotenoid...	nmrlearner	Journal club	0	08-21-2010 11:45 PM
NOESY signals and chi2 dihedral angle Hello out there! I have a question about the intensity of NOESY correlation signals and the chi2 dihedral angle. The more intense the NOE signals are, the closer the distance between the two nuclei, right? So, if two beta protons have close to the same NOE intensity on the NOESY, which can be described as medium intensity, what does that say about the conformation around the chi2 dihedral angle.........?	davis	NMR Questions and Answers	0	02-16-2010 04:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off