Hello everyone, I have a stupid question and often confuse me. We often meet peak missing in 15N H HSQC,but usually how many percent peak enough to solve NMR solution structure? I ask a lot of people and check in literature. Some guy suggested at least 80 except proline, other answer is at least 90%?For my current project, only appear 80% peak except proline. Now I am trying to optimize sample condition to make more peak. But I need to know a percent that I must optimize for my sample peak. Check my biology result I know that most missing peak lie in a very important disorder, which play an important function role. May I have a understand, If we can check missing peak. If miss peak have no important function, we don't care and directly to assign other peak and solve structure. If missing peak have function, it is a totally different condition. For my protein, If I can't make the disorder(misssing peak), I will not get the correct structure. Thanks a lot!
Chengkun Wang
Check if somebody has answered this question on NMRWiki QA forum
Did you find this post helpful? |
Similar Threads
Thread
Thread Starter
Forum
Replies
Last Post
Scientists Solve High-Resolution Structure of TSPO Molecular Transporter - AZoNano.com
<img alt="" height="1" width="1" />
Scientists Solve High-Resolution Structure of TSPO Molecular Transporter
AZoNano.com
This difficult task is carried out by a molecular transport protein named TSPO in the outer mitochondrial membrane. Using nuclear magnetic resonance spectroscopy, two teams working with the Göttingen-based scientists Markus Zweckstetter and Stefan ...
Scientists Solve High-Resolution Structure of TSPO Molecular Transporter - AZoNano.com
More...
nmrlearner
Online News
0
03-24-2014 11:08 PM
1H-15N HSQC, edited by a 1H inversion recovery and observed in the antiphase component (IR-HSQC-AP)
Could someone explain the experimental theory/basis behind 1H-15N inversion recovery filtered HSQC experiment observed in antiphase (IR-HSQC-AP)? I am still learning basic NMR theory, but would like to know about this particular experiment, which was used to detect paramagnetically broadened backbone resonances. Thanks.
Abstract
Biogenesis of iron–sulfur cluster proteins is a highly regulated process that requires complex protein machineries. In the cytosolic iron–sulfur protein assembly machinery, two human key proteins—NADPH-dependent diflavin oxidoreductase 1 (Ndor1) and...
talderson
NMR Questions and Answers
0
09-23-2013 06:01 AM
[NMR images] Let's go through the steps you should take to solve any NMR structure ...
http://50.57.82.128/sites/default/files/userfiles/48/uploaded_images/nmr%20q3.png
www.mendelset.com
18/06/2013 7:23:35 AM GMT
Let's go through the steps you should take to solve any NMR structure ...
More...
nmrlearner
NMR pictures
0
06-18-2013 07:57 PM
[NMR images] Let's solve this NMR structure elucidation problem using steps similar ...
http://50.57.82.128/sites/default/files/userfiles/48/uploaded_images/redox%20q5.png
www.mendelset.com
18/06/2013 7:23:35 AM GMT
Let's solve this NMR structure elucidation problem using steps similar ...
More...
nmrlearner
NMR pictures
0
06-18-2013 07:21 AM
Researchers solve complete 3-D structure of E6 proteins in HPV 16 - News-Medical.net
Researchers solve complete 3-D structure of E6 proteins in HPV 16 - News-Medical.net
<img alt="" height="1" width="1" />
Researchers solve complete 3-D structure of E6 proteins in HPV 16
News-Medical.net
Success depended on two factors: the development of methods for isolating protein E6 as well as the use of nuclear magnetic resonance (NMR) and crystallography techniques. Having dealt with various aggregation and purification problems, the researchers ...
and more »
Read here
nmrlearner
Online News
0
02-16-2013 05:53 AM
[Question from NMRWiki Q&A forum] peak missing in nh hsqc protein nmr
peak missing in nh hsqc protein nmr
Dear NMR wikiers
iam assigning 95 aminoacid residue protein . i can see 76 cross peaks in hsqc on 700 vnmr cryob . still some peaks are missing . i tried at modified ph conditions , buffer ionic strength and d2o percentage ( 5 to 10 percent ).but no significant improvement
is their any experment to get best number of cross peaks in hsqc ?
nmrlearner
News from other NMR forums
0
06-28-2011 04:40 PM
[NMR paper] Automated peak picking and peak integration in macromolecular NMR spectra using AUTOP
Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY.
Related Articles Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY.
J Magn Reson. 1998 Dec;135(2):288-97
Authors: Koradi R, Billeter M, Engeli M, Güntert P, Wüthrich K
A new approach for automated peak picking of multidimensional protein NMR spectra with strong overlap is introduced, which makes use of the program AUTOPSY (automated peak picking for NMR spectroscopy). The main elements of this program are a novel...
nmrlearner
Journal club
0
11-17-2010 11:15 PM
[NMR paper] Use of proline mutants to help solve the NMR solution structure of type III antifreez
Use of proline mutants to help solve the NMR solution structure of type III antifreeze protein.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Use of proline mutants to help solve the NMR solution structure of type III antifreeze protein.
Protein Sci. 1993 Sep;2(9):1411-28
Authors: Chao H, Davies PL, Sykes BD, Sönnichsen FD...