BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-27-2013, 01:52 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default How to get off resonance ligand integral in STD experiment

How to get off resonance ligand integral in STD experiment

Hello I am using satxfer1D experiment on varian unity plus 500 MHz spectrometer and vnmr (not vnmrJ!) software. I would like to determine dissociation constant from STD amplification factor (Io-Isat)/Io. So I need separate spectrum saturated at 30ppm to get off-resonance ligand integrals Io. Standard STD experiment give me only the difference between on- and off- resonance spectra (Io-Isat). Is the possibility to extract or to programm satxfer1D experiment to get what I want?



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] edasp window for 1H/19F double resonance experiment
edasp window for 1H/19F double resonance experiment Hello to all, This time I am having problem with doing a double resonance experiment. The final goal is to do 1H/19F-HOESY, but I am confused in the edasp window:http://dl.dropbox.com/u/12535433/04.JPG I remember I was doing 1H/13C heteronuclear shift correlation experiments before. I think for 13C it uses X-transmitter(!) and x100W amplifier. A normal 1D-19F works fine (H50W-X-XBB).It is a NMR300 and a QNP probe.Thanks is advance,Amin Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 05-05-2012 12:14 AM
Protein-ligand docking guided by ligand pharmacophore-mapping experiment by NMR.
Protein-ligand docking guided by ligand pharmacophore-mapping experiment by NMR. Protein-ligand docking guided by ligand pharmacophore-mapping experiment by NMR. J Mol Graph Model. 2011 Sep 3; Authors: Fukunishi Y, Mizukoshi Y, Takeuchi K, Shimada I, Takahashi H, Nakamura H Abstract We developed a new protein-ligand docking calculation method using experimental NMR data. Recently, we proposed a novel ligand epitope-mapping experiment, which utilizes the difference between the longitudinal relaxation rates of ligand protons with and...
nmrlearner Journal club 0 09-24-2011 04:11 PM
[NMR tweet] Free Ebook Pulsed Nuclear Magnetic Resonance Experiment view file http://ht.ly/1cklDb
Free Ebook Pulsed Nuclear Magnetic Resonance Experiment view file http://ht.ly/1cklDb Published by freepdfebook (free ebook) on 2011-04-25T01:23:34Z Source: Twitter
nmrlearner Twitter NMR 0 04-25-2011 01:31 AM
[NMR tweet] PNMR, Pulsed Nuclear Magnetic Resonance, Experiment http://ur.ly/GVDD #experimentalphysics
PNMR, Pulsed Nuclear Magnetic Resonance, Experiment http://ur.ly/GVDD #experimentalphysics Published by StackPhysics (Physics SE) on 2011-03-21T02:26:55Z Source: Twitter
nmrlearner Twitter NMR 0 03-21-2011 02:30 AM
Automated NMR Resonance Assignment of Large Proteins for Protein-Ligand Interaction Studies.
Automated NMR Resonance Assignment of Large Proteins for Protein-Ligand Interaction Studies. Automated NMR Resonance Assignment of Large Proteins for Protein-Ligand Interaction Studies. J Am Chem Soc. 2010 Dec 16; Authors: Gossert AD, Hiller S, Ferna?ndez C The detection and structural characterization of protein-ligand interactions by solution NMR is central to functional biology research as well as to drug discovery. Here we present a robust and highly automated procedure for obtaining the resonance assignments necessary for studies of such...
nmrlearner Journal club 0 12-18-2010 12:00 PM
Automated NMR Resonance Assignment of Large Proteins for Protein-Ligand Interaction Studies
Automated NMR Resonance Assignment of Large Proteins for Protein-Ligand Interaction Studies Alvar D. Gossert, Sebastian Hiller and Ce?sar Ferna?ndez http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja108383x/aop/images/medium/ja-2010-08383x_0004.gif Journal of the American Chemical Society DOI: 10.1021/ja108383x http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/E3PMYeBSCeE
nmrlearner Journal club 0 12-17-2010 12:50 AM
[NMR paper] On the ligand-protein and ligand-flavin interactions in NADPH-adrenodoxin reductase a
On the ligand-protein and ligand-flavin interactions in NADPH-adrenodoxin reductase as studied by 31P- and 13C-NMR. Use of 13C-enriched FAD as a probe. Related Articles On the ligand-protein and ligand-flavin interactions in NADPH-adrenodoxin reductase as studied by 31P- and 13C-NMR. Use of 13C-enriched FAD as a probe. J Biochem. 1991 Jan;109(1):144-9 Authors: Fujii S, Nonaka Y, Okamoto M, Miura R The interaction between 2',5'-ADP and NADPH-adrenodoxin reductase from bovine adrenocortical mitochondria was examined by titrating the enzyme with...
nmrlearner Journal club 0 08-21-2010 11:16 PM
HNCB Triple Resonance Experiment (Varian)
Hello, Has anyone come across this experiment? I see it listed but have not been able to find the pulse sequence. I have noticed that in some cases that the reference simply implies the HNCACB experiment running in such a way to allow complete transfer to the CB. So is there an HNCB or is the only HNCB in the form of the HNCACB with the delay set to allow complete transfer to the CB? Thanks in advance!!!
element771 NMR Questions and Answers 0 07-22-2009 01:28 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 12:51 AM.


Map