I am trying to compare the H-bonds in two NMR strcutures. So, I need to calculate H-bonds with a cutoff 2.5 and angle 35 angestrom that are availbale in 10 structures out of 20. I run list_hbonds.py as below:
list_hb, selection1, cutoff=2.5, angle=35
but it doesn not meet what I want. I want to look at inter and intra H-bonds (between two complexes of the protein and in each chain, too).
How can I do that when I have splitted the ensemble to the 20 structures in pymol?
Cheers Mina
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