BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 11-15-2013, 12:34 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default How to convert inversion recovery data acquired using Spinsight

How to convert inversion recovery data acquired using Spinsight

Hi,

I do not know how to convert a data set acquired using Spinsight into a format that can be read by Topspin. The data set is an inversion recovery data set (set of 1d FIDs with different relaxation (tau) delays so I think this is called a pseudo-2D data set). I know NMRPipe is probably the way to go, but I do not know where I can find any useful scripts or how to go about converting this dataset. Any advice is appreciated.

Mike.



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
1H-15N HSQC, edited by a 1H inversion recovery and observed in the antiphase component (IR-HSQC-AP)
Could someone explain the experimental theory/basis behind 1H-15N inversion recovery filtered HSQC experiment observed in antiphase (IR-HSQC-AP)? I am still learning basic NMR theory, but would like to know about this particular experiment, which was used to detect paramagnetically broadened backbone resonances. Thanks. Abstract Biogenesis of iron–sulfur cluster proteins is a highly regulated process that requires complex protein machineries. In the cytosolic iron–sulfur protein assembly machinery, two human key proteins—NADPH-dependent diflavin oxidoreductase 1 (Ndor1) and...
talderson NMR Questions and Answers 0 09-23-2013 06:01 AM
[NMRpipe Yahoo group] Re: How to convert TopSpin3.0 2D data to nmrPipe for processing?
Re: How to convert TopSpin3.0 2D data to nmrPipe for processing? Hello Frank: Thank you for your attention. Initially the conversion did not work because the data was damaged during FTP transfer. After I told him to transfer More...
NMRpipe Yahoo group news News from other NMR forums 0 04-11-2012 03:47 AM
[NMRpipe Yahoo group] Re: How to convert TopSpin3.0 2D data to nmrPipe for processing?
Re: How to convert TopSpin3.0 2D data to nmrPipe for processing? Hi Frank, The "bruker" command in the version of NMRPipe that I'm currently using finds these values correctly. I meant that I had to adjust the existing More...
NMRpipe Yahoo group news News from other NMR forums 0 04-11-2012 03:47 AM
[NMRpipe Yahoo group] Re: How to convert TopSpin3.0 2D data to nmrPipe for processing?
Re: How to convert TopSpin3.0 2D data to nmrPipe for processing? Hi Michelle, Thanks for contributing to the NMRPipe group ... When using the NMRPipe "bruker" command, I wouldn't usually expect that any manual adjustment More...
NMRpipe Yahoo group news News from other NMR forums 0 04-10-2012 03:03 PM
[NMRpipe Yahoo group] Re: How to convert TopSpin3.0 2D data to nmrPipe for processing?
Re: How to convert TopSpin3.0 2D data to nmrPipe for processing? Hi Weixing, I can confirm that NMRDraw version 6.5 Rev 2012.009.14.35 (not the newest version) works with TopSpin 3.0 data. I believe I had to adjust the More...
NMRpipe Yahoo group news News from other NMR forums 0 04-10-2012 03:03 PM
[Question from NMRWiki Q&A forum] How to convert varian fid to bruker or xeasy data ?
How to convert varian fid to bruker or xeasy data ? I would like to use wenmr grid to assign side-chain of target protein by using the data ( C13 edit noesy and N15 edit noesy ) acquired on vnmrj 700 (cold prob) . we server I.D as follows http://haddock.chem.uu.nl/enmr/services/UNIO/unioserver.php?id=unioatnosascan.html But unfortunately the data we need submit on the web server is little different .
nmrlearner News from other NMR forums 0 12-30-2011 01:45 AM
[NMRpipe Yahoo group] Re: How to process data acquired with varian infinityPlus system by
Re: How to process data acquired with varian infinityPlus system by Hi there, Check out our NMRPipe library on our website. http://www.nanuc.ca/downloads/scripts.php That should help get a start. There is a login but we don't More...
nmrlearner News from other NMR forums 0 08-18-2010 11:15 AM
[NMRpipe Yahoo group] How to process data acquired with varian infinityPlus system by nmrp
How to process data acquired with varian infinityPlus system by nmrp hi, I am new to nmrpipe. I have data acquired with varian infinityPlus system. The data directory contains nine files, the fid is in the 'data' file acq acq_2 More...
nmrlearner News from other NMR forums 0 08-18-2010 11:15 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:08 AM.


Map