NMRpipe Yahoo group How to combine 3d varian datasets? - BioNMR

BioNMR

NMR aggregator & online community since 2003

BioNMR

Learn or help to learn NMR - get free NMR books!

Ask NMR questions!

Earn NMR points

Redeem NMR points

Vote for NMR papers

Ask to aggregate a site

Our Linkedin group

		BioNMR > NMR community > News from other NMR forums
[NMRpipe Yahoo group] How to combine 3d varian datasets?

Pulse sequences

Software forums

Webservers

NMR processing:

NMR assignment:

Backbone:

Side-chains:

UNIO ATNOS-Ascan

NOEs:

UNIO ATNOS-Candid

Structure from NMR restraints:

Ab initio:

UNIO ATNOS-Candid

Fragment-based:

BMRB CS-Rosetta

Rosetta-NMR (Robetta)

Template-based:

Refinement:

Structure from chemical shifts:

Fragment-based:

WeNMR CS-Rosetta

BMRB CS-Rosetta

Homology-based:

Torsion angles from chemical shifts:

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

MICS caps, β-turns

Flexibility from chemical shifts:

Interactions from chemical shifts:

Chemical shifts re-referencing:

UNIO Shiftinspector

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

Resolution-by-Proxy

SAVES2 or SAVES4

Ramachandran Plot

Quality Control Check

NMR spectrum prediction:

Flexibility from structure:

Molecular dynamics:

Chemical shifts prediction:

From structure:

CH3shift- Methyl

ArShift- Aromatic

CheShift-2- Cα

From sequence:

Disordered proteins:

Format conversion & validation:

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

Protein solubility:

Isotope labeling:

Solid-state NMR:

Reply

Search this Thread

Rate Thread

#1

Old

01-21-2011, 03:31 AM

NMRpipe Yahoo group news NMRpipe Yahoo group news is offline

NMRpipe Yahoo group news is offline

Senior Member

Join Date: Aug 2010

Posts: 443

NMR Credits: 0

NMR Points: 0

Downloads: 0

Uploads: 0

Default

How to combine 3d varian datasets?

How to combine 3d varian datasets?

Hello, I couldn't find a more recent suggestion that applies to my problem than this, but don't quite see how to go about combining the data. I have two 3D

More...

Reply With Quote

Did you find this post helpful?

|

Reply

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets A procedure to validate and correct the 13C chemical shift calibration of RNA datasets Abstract Chemical shifts reflect the structural environment of a certain nucleus and can be used to extract structural and dynamic information. Proper calibration is indispensable to extract such information from chemical shifts. Whereas a variety of procedures exist to verify the chemical shift calibration for proteins, no such procedure is available for RNAs to date. We present here a procedure to analyze and correct the calibration of 13C NMR data of RNAs. Our procedure uses five 13C chemical...	nmrlearner	Journal club	0	01-21-2012 06:26 PM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News Bruker and Lawrence Berkeley National Laboratory are collaborating to develop structural biology methods and tools that integrate small-angle x-ray scattering (SAXS) technology with nuclear magnetic resonance (NMR). The aim is to generate a set of data ... Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ...MarketWatch (press release) all 14 news articles »	nmrlearner	Online News	0	11-11-2011 08:26 AM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News The aim is to generate a set of data analysis algorithms for determining the structures of larger, multi-domain proteins and protein complexes with DNA, RNA or other proteins. The organizations claim that combining the NMR-derived 3-dimensional atomic ... Bruker and Lawrence...	nmrlearner	Online News	0	11-10-2011 08:09 PM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets? Re: How to combine 3d varian datasets? Thanks Frank, The script below works beautifully- this was one of the emails that only got delivered recently, but as it turns out I had another unscheduled More...	NMRpipe Yahoo group news	News from other NMR forums	0	06-21-2011 03:40 PM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets? Re: How to combine 3d varian datasets? Many ways to do this, including zero-filling in the Z-Axis, shifting the "second half" in the Z-Axis, then adding the two results. Since the 3D data format More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-27-2011 10:40 AM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets? Re: How to combine 3d varian datasets? Thanks! That is exactly the kind of thing I was looking for. Tara In the end I did manage to combine my datasets by a very clunky method. It appears that as More...	NMRpipe Yahoo group news	News from other NMR forums	0	01-29-2011 05:31 AM
[NMRpipe Yahoo group] Re: How to combine 3d varian datasets? Re: How to combine 3d varian datasets? please find below a small C program that concatenates two parts of a Varian FID file to a single new one. Courtesy of Lewis Kay. The carriage returns in the More...	NMRpipe Yahoo group news	News from other NMR forums	0	01-28-2011 04:52 AM
[Stan NMR blog] Bye, bye, Varian Bye, bye, Varian Complete Varian takeover by Agilent Technologies announced on July 27, 2009 More...	nmrlearner	News from NMR blogs	0	08-21-2010 05:42 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off