I recently updated my old (2007) NMRPipe installation, and now I have a problem selecting input files with any Tcl (or NMRWish) script. As far as I can tell,
[NMRpipe Yahoo group] Re: File selection dialog problem in TCL scripts
Re: File selection dialog problem in TCL scripts
Oh waily waily waily! Yes, I've seen this problem before, but like our other favorite X11-based Mac OS X problems, it doesn't happen on every system. In the
More...
[U. of Ottawa NMR Facility Blog] Sample Slice Selection in NMR Spectroscopy
Sample Slice Selection in NMR Spectroscopy
In MRI, field gradients are used routinely for slice selection while imaging a sample. Gradients are also finding applications in high resolution NMR spectroscopy employing fast data collection techniques using parallel data acquisition for multiple slices of the same sample. A good example of this can be found in Carlos' BLOG (and the references therein). The slice selection is accomplished by turning on a linear field gradient across the sample while applying an excitation pulse. While the gradient is on, the frequencies of each of the NMR...
nmrlearner
News from NMR blogs
0
01-07-2011 12:01 AM
[NMR paper] Filtering and selection of structural models: combining docking and NMR.
Filtering and selection of structural models: combining docking and NMR.
Related Articles Filtering and selection of structural models: combining docking and NMR.
Proteins. 2003 Oct 1;53(1):18-32
Authors: Dobrodumov A, Gronenborn AM
It is generally accepted that protein structures are more conserved than protein sequences, and 3D structure determination by computer simulations have become an important necessity in the postgenomic area. Despite major successes no robust, fast, and automated ab initio prediction algorithms for deriving accurate...
Gorenstein's scripts for Amber, etc.
The following Perl scripts for Amber-driven NMR structure determination are available from the website of Dr. Gorenstein:carnal.aveminclusters.in Calculates the average structure from sander restrt files and
calculates the RMSD for each vs. the average structure.
addcio.pl Add Na+ counterions to DNA
amber_2_charm.pl
amber_dna_pdb_to_star.pl
amber_pdb_to_star.pl
nmrlearner
NMR structure calculation
0
06-12-2005 03:21 AM
CNS water refinement scripts from RECOORD website
CNS scripts for water refinement of NMR-derived protein structures are available on the RECOORD website.
Reference:
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
Aart J. Nederveen 1, Jurgen F. Doreleijers 2, Wim Vranken 3, Zachary Miller 4, Chris A.E.M. Spronk 5, Sander B. Nabuurs 5, Peter Güntert 6, Miron Livny 4, John L. Markley 2, Michael Nilges 7, Eldon L. Ulrich 2, Robert Kaptein 1, Alexandre M.J.J. Bonvin 1 *
1Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands
2Center...
File selection dialog problem in TCL scripts
Linear Mode
