BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 03-05-2014, 11:57 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Diagnosing 1D selective NOE issues

Diagnosing 1D selective NOE issues

I'm trying to diagnose a possible issue performing a selective 1D NOE (selnogp) on a Bruker Avance II 500Mhz with TopSpin 2.1.

I have been testing a variety of samples in D20 or D20-H20. I'm observing "strange" looking line shapes, and I was curious if you had any insight on what factors could be at play here. I'm not sure if this is a normal issue due to multiplet structures, or a possible configuration issue with our gradients.

For example, attached are two control experiments (First: 0.1% H20 in 99.9% D20 || Second: 0.1% EtOH in 99.9% D20). For the short (= 1s), it seems like the humps disappear. The literature suggests that I should be able to achieve decent results even with short (~50ms) mixing times.

Do you have any suggestions about this? Below is a list of things I've already tried.
  1. Tried autoshim, didn't change much
  2. Tried adjusting relaxation delay (d1) from 1 to 5 s, didn't see a big effect
  3. Tried lb, but it ended up smearing the humps into smooth but non-symmetric lineshapes
  4. Tried using other systems (EtOH in D20, peptides)
  5. Tried re-phasing--there's no way to make the "hump" disappear
Below I've got





Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR Sparky Yahoo group] Re: vnm2ucsf issues
Re: vnm2ucsf issues Hi Gilles, Probably vnmr2ucsf is not using some referencing parameters from the Varian parameter files. The vnmr2ucsf program was written about 15 years ago More...
nmrlearner News from other NMR forums 0 11-09-2011 06:44 AM
[NMR Sparky Yahoo group] vnm2ucsf issues
vnm2ucsf issues Hello I'm experiencing issues when I run vnmr2ucsf, especially on 2D 1H/15N HSQC spectra. After conversion of my Varian spectra to the ucsf format, all the More...
nmrlearner News from other NMR forums 0 11-09-2011 06:44 AM
[NMR Sparky Yahoo group] Re: vnm2ucsf issues
Re: vnm2ucsf issues Hi Gilles, Probably vnmr2ucsf is not using some referencing parameters from the Varian parameter files. The vnmr2ucsf program was written about 15 years ago More...
nmrlearner News from other NMR forums 0 08-30-2011 06:51 AM
[NMR Sparky Yahoo group] vnm2ucsf issues
vnm2ucsf issues Hello I'm experiencing issues when I run vnmr2ucsf, especially on 2D 1H/15N HSQC spectra. After conversion of my Varian spectra to the ucsf format, all the More...
nmrlearner News from other NMR forums 0 08-30-2011 06:51 AM
Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR.
Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR. Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR. J Magn Reson. 2011 Mar 17; Authors: Traaseth NJ, Veglia G We present a new method that combines carbonyl-selective labeling with frequency-selective heteronuclear recoupling to resolve the spectral overlap of magic angle spinning (MAS) NMR...
nmrlearner Journal club 0 04-13-2011 11:57 PM
Frequency-Selective Heteronuclear Dephasing and Selective Carbonyl Labeling to Deconvolute Crowded Spectra of Membrane Proteins By Magic Angle Spinning NMR
Frequency-Selective Heteronuclear Dephasing and Selective Carbonyl Labeling to Deconvolute Crowded Spectra of Membrane Proteins By Magic Angle Spinning NMR Publication year: 2011 Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 17 March 2011</br> Nathaniel J., Traaseth , Gianluigi, Veglia</br> We present a new method that combines carbonyl-selective labeling with frequency-selective heteronuclear recoupling to resolve the spectral overlap of magic angle spinning (MAS) NMR spectra of membrane proteins in fluid lipid membranes with broad lines and...
nmrlearner Journal club 0 03-18-2011 06:43 AM
[Stan NMR blog] Books about Web Issues and Web Programming
Books about Web Issues and Web Programming BOOKS LIST: A large and growing collection with links to Amazon. More...
nmrlearner News from NMR blogs 0 08-21-2010 06:14 PM
[Stan NMR blog] NMR music and other issues
NMR music and other issues NMR education and Art - plus an apology for the author's delays More...
nmrlearner News from NMR blogs 0 08-21-2010 05:42 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 08:25 AM.


Map