NMR Sparky Yahoo group cyana extensions

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[NMR Sparky Yahoo group] cyana extensions

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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08-13-2011, 02:47 AM

nmrlearner

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cyana extensions

cyana extensions

Does someone have the cyana/garant or cyana extension developed through NMRFAM?* The link on the sparky page isnt working anymore.* Does someone have the

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Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] cyana extensions cyana extensions Does someone have the cyana/garant or cyana extension developed through NMRFAM?* The link on the sparky page isnt working anymore.* Does someone have the More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[NMR Sparky Yahoo group] Re: cyana extensions Re: cyana extensions hi Tom, this looks like a bug in ucsfdata: when I try to modify the downfield chemical shift and write to a new ucsf file it looks like both the inoput and More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[NMR Sparky Yahoo group] Re: cyana extensions Re: cyana extensions NMRFAM has distributions of sparky with their extensions added to it including the cyana one for those interested. ________________________________ From: More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[NMR Sparky Yahoo group] Re: cyana extensions Re: cyana extensions Hi Eiso, Looking at the code for the ucsfdata program (ucsfdata.cc and ucsffile.cc) I see that all of the options that change the file header values operate on More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[NMR Sparky Yahoo group] Re: cyana extensions Re: cyana extensions Hi Eiso, Looking at the code for the ucsfdata program (ucsfdata.cc and ucsffile.cc) I see that all of the options that change the file header values operate on More...	nmrlearner	News from other NMR forums	0	08-20-2011 04:50 AM
[NMR Sparky Yahoo group] Re: cyana extensions Re: cyana extensions hi Tom, this looks like a bug in ucsfdata: when I try to modify the downfield chemical shift and write to a new ucsf file it looks like both the inoput and More...	nmrlearner	News from other NMR forums	0	08-19-2011 04:20 PM
[NMR Sparky Yahoo group] Re: cyana extensions Re: cyana extensions NMRFAM has distributions of sparky with their extensions added to it including the cyana one for those interested. ________________________________ From: More...	nmrlearner	News from other NMR forums	0	08-13-2011 02:47 AM
structure refinement after cyana Can anybody tell me, how to energy minimize a CYANA calculated average structure. I used model_minimize.inp from CNS, but is there any other method generally used by the CYANA users. Also, how can I get the bonds, impropers and angle violation (rmsds) information on the CYANA calculated structures. Does CYANA has any program to do it. Please help me with it. Thank you.	sarun	NMR Questions and Answers	0	11-20-2008 03:41 AM

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