NMR Sparky Yahoo group Copying partial assignments?

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Copying partial assignments?

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-31-2010, 07:40 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Copying partial assignments?

Copying partial assignments?

I'm working on assigning sidechain resonances and NOEs. Restricted peak picking gives reasonable and easily edited sets of peaks in each spectrum. What I would

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: Copying partial assignments? Re: Copying partial assignments? ... Hi Andrew, I don't have access to sparky here, so I can't tell you exactly. But what you want is possible. Search for 'assignment guessing'. IIRC it's a More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:22 AM
[NMR Sparky Yahoo group] Copying partial assignments? Copying partial assignments? I'm working on assigning sidechain resonances and NOEs. Restricted peak picking gives reasonable and easily edited sets of peaks in each spectrum. What I would More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:22 AM
[NMR Sparky Yahoo group] Re: Copying partial assignments? Re: Copying partial assignments? ... Hi Andrew, I don't have access to sparky here, so I can't tell you exactly. But what you want is possible. Search for 'assignment guessing'. IIRC it's a More...	nmrlearner	News from other NMR forums	0	12-31-2010 07:40 AM
[NMR paper] Accepting its random coil nature allows a partial NMR assignment of the neuronal Tau Accepting its random coil nature allows a partial NMR assignment of the neuronal Tau protein. Related Articles Accepting its random coil nature allows a partial NMR assignment of the neuronal Tau protein. Chembiochem. 2004 Dec 3;5(12):1639-46 Authors: Smet C, Leroy A, Sillen A, Wieruszeski JM, Landrieu I, Lippens G A combined strategy to obtain a partial NMR assignment of the neuronal Tau protein is presented. Confronted with the extreme spectral degeneracy that the spectrum of this 441 amino acid long unstructured protein presents, we have...	nmrlearner	Journal club	0	11-24-2010 10:03 PM
[NMR paper] Partial alignment of biomolecules: an aid to NMR characterization. Partial alignment of biomolecules: an aid to NMR characterization. Related Articles Partial alignment of biomolecules: an aid to NMR characterization. Curr Opin Chem Biol. 2001 Oct;5(5):584-90 Authors: Prestegard JH, Kishore AI Partial alignment of biomolecules in solution has added a new dimension to structural investigation by high-resolution NMR methods. Applications to proteins, nucleic acids and carbohydrates now abound. Limitations initially associated with compatibility of biomolecules with the liquid-crystal media commonly used to...	nmrlearner	Journal club	0	11-19-2010 08:44 PM
[NMR paper] Partial NMR assignments for uniformly (13C, 15N)-enriched BPTI in the solid state. Partial NMR assignments for uniformly (13C, 15N)-enriched BPTI in the solid state. Related Articles Partial NMR assignments for uniformly (13C, 15N)-enriched BPTI in the solid state. J Biomol NMR. 2000 Mar;16(3):209-19 Authors: McDermott A, Polenova T, Bockmann A, Zilm KW, Paulson EK, Martin RW, Montelione GT, Paulsen EK We demonstrate that high-resolution multidimensional solid state NMR methods can be used to correlate many backbone and side chain chemical shifts for hydrated micro-crystalline U-13C,15N Basic Pancreatic Trypsin Inhibitor...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
[NMR paper] Partial purification and substrate specificity of heparan sulfate alpha-N-acetylgluco Partial purification and substrate specificity of heparan sulfate alpha-N-acetylglucosaminyltransferase I: synthesis, NMR spectroscopic characterization and in vitro assays of two aryl tetrasaccharides. Related Articles Partial purification and substrate specificity of heparan sulfate alpha-N-acetylglucosaminyltransferase I: synthesis, NMR spectroscopic characterization and in vitro assays of two aryl tetrasaccharides. Glycobiology. 1997 Jul;7(5):587-95 Authors: Fritz TA, Agrawal PK, Esko JD, Krishna NR Studies of heparan sulfate biosynthesis...	nmrlearner	Journal club	0	08-22-2010 03:31 PM
[NMR paper] Partial purification and substrate specificity of heparan sulfate alpha-N-acetylgluco Partial purification and substrate specificity of heparan sulfate alpha-N-acetylglucosaminyltransferase I: synthesis, NMR spectroscopic characterization and in vitro assays of two aryl tetrasaccharides. Related Articles Partial purification and substrate specificity of heparan sulfate alpha-N-acetylglucosaminyltransferase I: synthesis, NMR spectroscopic characterization and in vitro assays of two aryl tetrasaccharides. Glycobiology. 1997 Jul;7(5):587-95 Authors: Fritz TA, Agrawal PK, Esko JD, Krishna NR Studies of heparan sulfate biosynthesis...	nmrlearner	Journal club	0	08-22-2010 03:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off