BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Ask NMR questions! Earn NMR points Redeem NMR points Vote for NMR papers Twitter Ask to aggregate a site  Our Linkedin group
Go Back   BioNMR > NMR community > News from other NMR forums
color combination in nmrpipe [NMRpipe Yahoo group] color combination in nmrpipe
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR

Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 12-06-2010, 09:44 PM
NMRpipe Yahoo group news's Avatar
Senior Member
  
Join Date: Aug 2010
Posts: 443
NMR Credits: 0
NMR Points: 0
Downloads: 0
Uploads: 0
Default color combination in nmrpipe
color combination in nmrpipe

Dear all, We are new user of nmrpipe, while doing the 2D processing we are getting peaks with two colors but we don't know which one we have to consider for

More...
Reply With Quote

Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMRpipe Yahoo group] Re: color combination in nmrpipe
Re: color combination in nmrpipe Hi Amretia Sounds like you have negative and positive peaks in a 2D spectra, you can check by changing your contour level for the negative peaks and see if the More... 		NMRpipe Yahoo group news News from other NMR forums 0 05-27-2011 10:40 AM
[NMR Sparky Yahoo group] Re: color code in sparky
Re: color code in sparky If you are expecting only positive intensity (red) peaks in your spectrum, make sure that the green (negative intensity) peaks that you are seeing are much More... 		nmrlearner News from other NMR forums 0 12-08-2010 10:04 AM
[NMRpipe Yahoo group] Re: color combination in nmrpipe
Re: color combination in nmrpipe What kind of data are you processing? Ravi S. Ampapathi, Ph.D., Scientist, NMR Division (SAIF) CDRI, Lucknow-226001 e-mail: ravi_sa@... Phone: More... 		NMRpipe Yahoo group news News from other NMR forums 0 12-07-2010 09:55 PM
[NMR Sparky Yahoo group] color code in sparky
color code in sparky Dear All, We are new user of sparky, we have read in sparky manual that after processing the time-doamin data from NMRPipe we can import its output in sparky More... 		nmrlearner News from other NMR forums 0 12-07-2010 09:54 AM
[NMRpipe Yahoo group] Re: color combination in nmrpipe
Re: color combination in nmrpipe Although this is a very basic question, I think it has never been covered anywhere ... In the nmrDraw color scheme for drawing spectra, positive intensities More... 		NMRpipe Yahoo group news News from other NMR forums 0 12-06-2010 09:44 PM
[NMR Sparky Yahoo group] Re: peak color
Re: peak color I will give it a shot, but there is now way to edit some code that comes with MacOS version? ________________________________ From: Tom Goddard More... 		nmrlearner News from other NMR forums 0 11-10-2010 04:10 AM
[NMR Sparky Yahoo group] Re: peak color
Re: peak color Hi Andrew, Unfortunately the white color of the peak markers and labels in Sparky is coded into the C++ and cannot be changed without recompiling Sparky. If More... 		nmrlearner News from other NMR forums 0 10-29-2010 09:32 PM
[NMR Sparky Yahoo group] peak color
peak color Is there a way to edit the some file so that every time i pick a peak and label it so that they come up black instead of white? More... 		nmrlearner News from other NMR forums 0 10-29-2010 09:32 PM


« Previous Thread | Next Thread »

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts
BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off

BioNMR RSS Feeds - FAQ - Members - Terms of Service - Privacy Statement - Site Map - Top


BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 12:41 AM.


Map