I am in process of doing structure calculation of a dimeric protein. The problem I faced is regarding the assignment of N15Edit NOESY and C13 Edit NOESY spectrum.I have already processed the fid data and converted to sparky ucsf format. Is there options available in sparky for auto peak picking, integration and assignment of my NOESY spectrum? And second query is regarding the generation of input files for structure calculation. In our Lab we are using ARIA 2.1 software for structure calculation? Is there any software which can help me create or convert input files like NOESY peak list files, chemical shift files, angle restraint files &H-bond distance restraint files directly into ARIA 2.1 format from my data.
RegardsArun
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[Question from NMRWiki Q&A forum] what is best pulse sequence for c13 edit noesy on vnmrj ?
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Hi
What is best pulse sequence in bio pack on vnmrj for C-13 edit NOESY ? I am working with 12 kd size protein which can exist as homo dimers ( i.e total size of homo-dimer is 24 kd ). Most frequent problems we are encountering as follows !line broadening , baseline , phase correction problems ( huge signal at 2.8 ppm )in first increments and f2f3 planes huge strips errors !
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Fig-1 1D projections fig-2 f1f3 projection in process in t1fig-3 f1f3 projection in process in t1 after transformation (1026-512-256)
<img width=50% src="http://qa.nmrwiki.org/upfiles/13204074491921939.png" /img>
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Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9607-12
Authors: Pervushin KV, Wider G, Riek R, Wüthrich K
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