BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 05-16-2011, 08:22 AM
NMRpipe Yahoo group news's Avatar
Senior Member
 
Join Date: Aug 2010
Posts: 443
NMR Credits: 0
NMR Points: 0
Downloads: 0
Uploads: 0
Default 3D cube image in NMRPipe

3D cube image in NMRPipe

Hello, I'm trying to run the nmrCube.tcl script that I found posted here, and I get the message "command not found". I guess it has nothing to do with the

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data Thanks a lot for the script. How do I export the image I obtained from nmrCube.tcl to, say, a postscript file? Thanks in advance. Best regards, George More...
NMRpipe Yahoo group news News from other NMR forums 0 07-11-2011 07:41 AM
[NMRpipe Yahoo group] 3D cube image in NMRPipe
3D cube image in NMRPipe Hello, I'm trying to run the nmrCube.tcl script that I found posted here, and I get the message "command not found". I guess it has nothing to do with the More...
NMRpipe Yahoo group news News from other NMR forums 0 04-15-2011 01:40 AM
[KPWU blog] [NMRPipe]?making a 3D cube
?making a 3D cube On Feb 18th, an user asked whether there are ways to make a 3D cube of NMR data at the NMRPipe discussion group at Yahoo. Frank Delaglio, the author of NMRPipe, provided a very very nice script to generate the cube. The script is pasted in this post and user can copy it, save it http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=329&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 04-15-2011 01:40 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data Hello, I tried to use the nmrCube.tcl script on an HNCO spectrum. I get the first of the two images, while I would like to have something that looks like the More...
NMRpipe Yahoo group news News from other NMR forums 0 03-20-2011 07:14 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data As with most any UNIX script, put the contents into a plain text file, make the file executable, and then run it by typing the file name at the UNIX command More...
NMRpipe Yahoo group news News from other NMR forums 0 02-24-2011 11:30 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data Dear Sir, Kindly mention the command to run this nmrCube.tcl script. Thanks, Amrita Kumari Research Scholar IISER Mohali Chandigarh More...
NMRpipe Yahoo group news News from other NMR forums 0 02-20-2011 10:31 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data
Re: 3D cube representation of NMRPipe data Quoting Douglas Kojetin : Here's a script to make a crude 3D cube-display, but no axis labels. I made it, huzzah. cheerful regards, More...
NMRpipe Yahoo group news News from other NMR forums 0 02-18-2011 10:01 PM
[NMRpipe Yahoo group] 3D cube representation of NMRPipe data
3D cube representation of NMRPipe data Hi All, Does anyone know how to make a 3D cube representation of a 3D NMR dataset, such as the HNCO, from data processed in NMRPipe? Thanks, Doug More...
NMRpipe Yahoo group news News from other NMR forums 0 02-18-2011 10:01 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:04 PM.


Map