NMRpipe Yahoo group 3D cube image in NMRPipe - BioNMR

BioNMR

NMR aggregator & online community since 2003

BioNMR

Learn or help to learn NMR - get free NMR books!

Ask NMR questions!

Earn NMR points

Redeem NMR points

Vote for NMR papers

Ask to aggregate a site

Our Linkedin group

		BioNMR > NMR community > News from other NMR forums
[NMRpipe Yahoo group] 3D cube image in NMRPipe

Pulse sequences

Software forums

Webservers

NMR processing:

NMR assignment:

Backbone:

Side-chains:

UNIO ATNOS-Ascan

NOEs:

UNIO ATNOS-Candid

Structure from NMR restraints:

Ab initio:

UNIO ATNOS-Candid

Fragment-based:

BMRB CS-Rosetta

Rosetta-NMR (Robetta)

Template-based:

Refinement:

Structure from chemical shifts:

Fragment-based:

WeNMR CS-Rosetta

BMRB CS-Rosetta

Homology-based:

Torsion angles from chemical shifts:

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

MICS caps, β-turns

Flexibility from chemical shifts:

Interactions from chemical shifts:

Chemical shifts re-referencing:

UNIO Shiftinspector

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

Resolution-by-Proxy

SAVES2 or SAVES4

Ramachandran Plot

Quality Control Check

NMR spectrum prediction:

Flexibility from structure:

Molecular dynamics:

Chemical shifts prediction:

From structure:

CH3shift- Methyl

ArShift- Aromatic

CheShift-2- Cα

From sequence:

Disordered proteins:

Format conversion & validation:

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

Protein solubility:

Isotope labeling:

Solid-state NMR:

Reply

Search this Thread

Rate Thread

#1

Old

04-15-2011, 01:40 AM

NMRpipe Yahoo group news NMRpipe Yahoo group news is offline

NMRpipe Yahoo group news is offline

Senior Member

Join Date: Aug 2010

Posts: 443

NMR Credits: 0

NMR Points: 0

Downloads: 0

Uploads: 0

Default

3D cube image in NMRPipe

3D cube image in NMRPipe

Hello, I'm trying to run the nmrCube.tcl script that I found posted here, and I get the message "command not found". I guess it has nothing to do with the

More...

Reply With Quote

Did you find this post helpful?

|

Reply

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data Re: 3D cube representation of NMRPipe data Thanks a lot for the script. How do I export the image I obtained from nmrCube.tcl to, say, a postscript file? Thanks in advance. Best regards, George More...	NMRpipe Yahoo group news	News from other NMR forums	0	07-11-2011 07:41 AM
[NMRpipe Yahoo group] 3D cube image in NMRPipe 3D cube image in NMRPipe Hello, I'm trying to run the nmrCube.tcl script that I found posted here, and I get the message "command not found". I guess it has nothing to do with the More...	NMRpipe Yahoo group news	News from other NMR forums	0	05-16-2011 08:22 AM
[KPWU blog] [NMRPipe]?making a 3D cube ?making a 3D cube On Feb 18th, an user asked whether there are ways to make a 3D cube of NMR data at the NMRPipe discussion group at Yahoo. Frank Delaglio, the author of NMRPipe, provided a very very nice script to generate the cube. The script is pasted in this post and user can copy it, save it http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=329&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	04-15-2011 01:40 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data Re: 3D cube representation of NMRPipe data Hello, I tried to use the nmrCube.tcl script on an HNCO spectrum. I get the first of the two images, while I would like to have something that looks like the More...	NMRpipe Yahoo group news	News from other NMR forums	0	03-20-2011 07:14 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data Re: 3D cube representation of NMRPipe data As with most any UNIX script, put the contents into a plain text file, make the file executable, and then run it by typing the file name at the UNIX command More...	NMRpipe Yahoo group news	News from other NMR forums	0	02-24-2011 11:30 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data Re: 3D cube representation of NMRPipe data Dear Sir, Kindly mention the command to run this nmrCube.tcl script. Thanks, Amrita Kumari Research Scholar IISER Mohali Chandigarh More...	NMRpipe Yahoo group news	News from other NMR forums	0	02-20-2011 10:31 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data Re: 3D cube representation of NMRPipe data Quoting Douglas Kojetin : Here's a script to make a crude 3D cube-display, but no axis labels. I made it, huzzah. cheerful regards, More...	NMRpipe Yahoo group news	News from other NMR forums	0	02-18-2011 10:01 PM
[NMRpipe Yahoo group] 3D cube representation of NMRPipe data 3D cube representation of NMRPipe data Hi All, Does anyone know how to make a 3D cube representation of a 3D NMR dataset, such as the HNCO, from data processed in NMRPipe? Thanks, Doug More...	NMRpipe Yahoo group news	News from other NMR forums	0	02-18-2011 10:01 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off