BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-19-2014, 11:21 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default 15N 90 degree hard pulse calibration

15N 90 degree hard pulse calibration

Greetings, I want to ask for some advice in matter of 15N hard pulse calibration on Bruker machines. I'm working on Avance DRX 500 with 5mm TBI probe. This calibration is easy to made if 15N urea is avaible, but I don't have opportunity to use this compound. I have in my stable horses as follows:

methylamine hydrochloride (99% 15N) ammonium chloride (99,9% 15N) aniline (15N >99%) sodium nitrite (99% 15N)

I tried to use first two salts in DMSO-d6. Unfortunately I couldn't obtain proton spectrum with multiplet structure that is needed for pulse calibration (pulse sequence decp90), only broad peaks were visible ( protons attached to nitrogen directly). Aniline in Benzene also gave only broad signal. I tried to perform this calibration using 1D HSQC methodology but it also failed. (increasing pulse lenght in popt).

What am I doing wrong ? How can I calibrate this pulse without urea ?

Best regards, A. Leniak



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] hard pulse frequency
hard pulse frequency Hello, anyone knows how to change the frequency from one hard pulse to another in a simple 2 pulses sequence at the minispec? that means, I want to apply two pulses with different frequencies. Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 06-02-2014 10:02 PM
[NMR paper] NMR study into the mechanism of recognition of the degree of polymerization by oligo/polysialic acid antibodies.
NMR study into the mechanism of recognition of the degree of polymerization by oligo/polysialic acid antibodies. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR study into the mechanism of recognition of the degree of polymerization by oligo/polysialic acid antibodies. Bioorg Med Chem. 2013 Oct 1;21(19):6069-76 Authors: Hanashima S, Sato C, Tanaka H, Takahashi T, Kitajima K, Yamaguchi Y Abstract Oligo/polysialic acids consisting...
nmrlearner Journal club 0 04-08-2014 08:02 PM
[Question from NMRWiki Q&A forum] what is hard and soft pulse and its usage
what is hard and soft pulse and its usage what is hard and soft pulse and its usage Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 04-24-2013 09:48 PM
Optimal degree of protonation for 1H detection of aliphatic sites in randomly deuterated proteins as a function of the MAS frequency
Optimal degree of protonation for 1H detection of aliphatic sites in randomly deuterated proteins as a function of the MAS frequency Abstract The 1H dipolar network, which is the major obstacle for applying proton detection in the solid-state, can be reduced by deuteration, employing the RAP (Reduced Adjoining Protonation) labeling scheme, which yields random protonation at non-exchangeable sites. We present here a systematic study on the optimal degree of random sidechain protonation in RAP samples as a function of the MAS (magic angle spinning) frequency. In particular, we compare 1H...
nmrlearner Journal club 0 08-25-2012 08:56 AM
[Question from NMRWiki Q&A forum] bsms hard ware test on nmr specrometer
bsms hard ware test on nmr specrometer HI nmr wikierI want to test bruker nmr spectometer bsms unit on board level including all boards.How to run the test from bsms service tool. THANKS in advance for replaying Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 03-12-2012 02:34 AM
[U. of Ottawa NMR Facility Blog] Probe Tuning and 90 Degree Pulses
Probe Tuning and 90 Degree Pulses In order to get meaningful results from multiple-pulse NMR pulse sequences, it is essential that the 90° and 180° pulses are calibrated at the power levels used in the sequences (see this post for example). The calibrations are usually done on a standard sample in a well tuned and matched probe. The calibrations are typically stored in a file which is called up when setting up particular NMR experiments. It is important to know that these calibrations are correct for the particular sample of interest only when the probe is well tuned and matched. For...
nmrlearner News from NMR blogs 0 09-16-2011 10:02 PM
[NMR tweet] NMR (Nuclear Magnetic Resonance) magnet to erase hard disk?: Commercial hard disk dem
NMR (Nuclear Magnetic Resonance) magnet to erase hard disk?: Commercial hard disk demagnetizers (sanitizers) uses ... http://bit.ly/dnLxNv Published by FreeEnergyMagg (Montana Carlson) on 2010-10-31T03:38:18Z Source: Twitter
nmrlearner Twitter NMR 0 10-31-2010 04:01 AM
[U. of Ottawa NMR Facility Blog] Fast 90 Degree Pulse Determination
Fast 90 Degree Pulse Determination Almost all NMR measurements rely on the correct calibration of 90° pulses. This is traditionally done by collecting a series of spectra as a function of pulse duration, finding a null for the 180° or 360° pulse and calculating the 90° pulse by simple division by 2 or 4 in the case of the 180° and 360° nulls, respectively. This determination, although trivial, can be very time consuming. Wu and Otting* have presented a much faster method of determining a 90° pulse based on measuring the nutation of a magnetization vector directly. Continuous nutation is...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 07:22 AM.


Map