BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 02-29-2020, 09:52 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Where is my INEPT signal? - Proton Exchange Issues

Where is my INEPT signal? - Proton Exchange Issues

INEPT and DEPT sequences are routinely used to enhance the NMR signals for low ? nuclides such as 15N or 13C. The enhancement relies on polarization transfer between the protons J-coupled and the low ? nuclide. The pulse sequences incorporate delays based on the reciprocal of the J-coupling constant between the protons and the low ? nuclide. In the case of 15N INEPT, the enhancement for each scan can be as much as ?H/?N (~ 10) compared to that from a conventional one-pulse sequence with inverse gated decoupling. Furthermore, the recycle delay for the INEPT sequence depends on the the 1H T1 relaxation time rather than that of 15N. 1H T1's are typically an order of magnitude (or more) less than those of 15N so the recycle delays required for 15N INEPT spectra are at least ten (and possibly 100 times) shorter than those required for one-pulse data collection. These two factors mean that the true time saving for a 15N INEPT measurement compared to a one-pulse 15N measurement can be on the order of 100 - 1000 times. There are, however cases where 15N INEPT signals are attenuated or entirely nonexistent. Attenuated 15N INEPT signals are observed when the protons (with short T1) coupled to 15N exchange with those of water (longer T1) on a time scale of seconds.* The problem arises because of saturation transfer during the inverse gated decoupling used during the acquisition time. The partially saturated protons are unable to transfer as much polarization to the 15N as they would were they fully polarized. The problem can be reduced if a recycle delay much greater than the T1 relaxation time of the water protons is employed. If the protons bound to 15N undergo exchange with other labile protons at a rate fast with respect to the 1H-15N J coupling interaction, polarization transfer from 1H to 15N is not possible and a 15N INEPT signal cannot be observed. This is demonstrated in the figure below.
Concentrated solutions of the methyl ester of anthranilic acid and anthranilic acid were prepared in DMSO-d6. The 15N NMR data were collected on a 600 MHz instrument with a cryoprobe. The left-hand panel of the figure compares the 15N one-pulse spectrum with inverse gated decoupling (bottom) to the INEPT spectrum (top) for the methyl ester. The spectra were collected with the same number of scans. For the methyl ester, the 15N bound protons do not exchange with any other labile protons. The enhancement in the 15N INEPT spectrum is clear. Similar spectra for anthranilic acid are shown on the right-hand side of the figure. In anthranilic acid, the 15N bound -NH2 protons undergo intramolecular exchange with the acid proton at a rate fast with respect to the one-bond 15N-1H coupling constant (~90 Hz). As a result, polarization transfer is not possible and no INEPT signal is observed. The same is true for the meta- and para- isomers (data not shown).

Thank you to Jin Hong for sharing her experience with collecting 15N INEPT data for anthranilic acid and Mojmir Suchy for kindly providing the samples.

* G.D. Henry and B.D. Sykes, J. Magn. Reson. B, 102, 193 (1993).


Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
3-O-Methyl- d -glucose mutarotation and proton exchange rates assessed by 13 C, 1 H NMR and by chemical exchange saturation transfer and spin lock measurements
3-O-Methyl- d -glucose mutarotation and proton exchange rates assessed by 13 C, 1 H NMR and by chemical exchange saturation transfer and spin lock measurements Abstract 3-O-Methyl-d-glucose (3OMG) was recently suggested as an agent to image tumors using chemical exchange saturation transfer (CEST) MRI. To characterize the properties of 3OMG in solution, the anomeric equilibrium and the mutarotation rates of 3OMG were studied by 1H and 13C NMR. This information is essential in designing the in vivo CEST experiments. At room temperature, the ratio...
nmrlearner Journal club 0 11-25-2018 06:02 AM
[NMR paper] Aberrant increase of NMR signal in hydrogen exchange experiments. Observation and explanation.
Aberrant increase of NMR signal in hydrogen exchange experiments. Observation and explanation. Aberrant increase of NMR signal in hydrogen exchange experiments. Observation and explanation. Biochem Biophys Res Commun. 2016 Aug 17; Authors: Xue M, Kitahara R, Yoshimura Y, Mulder FA Abstract Hydrogen exchange (HX) NMR spectroscopy is widely used for monitoring structure, stability and dynamics of proteins at the level of individual residues. The stochastic replacement of protons by deuterons typically leads to an exponential...
nmrlearner Journal club 0 08-22-2016 10:38 AM
[NMR paper] Signal intensities in (1)H-(13)C CP and INEPT MAS NMR of liquid crystals.
Signal intensities in (1)H-(13)C CP and INEPT MAS NMR of liquid crystals. Related Articles Signal intensities in (1)H-(13)C CP and INEPT MAS NMR of liquid crystals. J Magn Reson. 2013 Mar 14;230C:165-175 Authors: Nowacka A, Bongartz NA, Ollila OH, Nylander T, Topgaard D Abstract Spectral editing with CP and INEPT in (13)C MAS NMR enables identification of rigid and mobile molecular segments in concentrated assemblies of surfactants, lipids, and/or proteins. In order to get stricter definitions of the terms "rigid" and "mobile", as...
nmrlearner Journal club 0 04-02-2013 07:23 PM
[NMR paper] Signal intensities in 1H-13C CP and INEPT MAS NMR of liquid crystals
Signal intensities in 1H-13C CP and INEPT MAS NMR of liquid crystals Available online 14 March 2013 Publication year: 2013 Source:Journal of Magnetic Resonance</br> </br> Spectral editing with CP and INEPT in 13C MAS NMR enables identification of rigid and mobile molecular segments in concentrated assemblies of surfactants, lipids, and/or proteins. In order to get stricter definitions of the terms “rigid” and “mobile”, as well as resolving some ambiguities in the interpretation of CP and INEPT data, we have developed a theoretical model for calculating the CP and INEPT...
nmrlearner Journal club 0 03-15-2013 11:17 AM
NMR Detection of pH-Dependent Histidine–Water Proton Exchange Reveals the Conduction Mechanism of a Transmembrane Proton Channel
NMR Detection of pH-Dependent Histidine–Water Proton Exchange Reveals the Conduction Mechanism of a Transmembrane Proton Channel Fanghao Hu, Klaus Schmidt-Rohr and Mei Hong http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja2081185/aop/images/medium/ja-2011-081185_0008.gif Journal of the American Chemical Society DOI: 10.1021/ja2081185 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/C3pPoB5_PR8
nmrlearner Journal club 0 10-22-2011 10:16 AM
[NMRpipe Yahoo group] Re: Baseline issues in directly detected proton dimension of 13C-HSQ
Re: Baseline issues in directly detected proton dimension of 13C-HSQ Hi Justin, This sensitivity enhanced experiment usually achieves good water suppression, but you could try removing some of the water with a polynomial solvent More...
NMRpipe Yahoo group news News from other NMR forums 0 07-13-2011 08:31 PM
[NMRpipe Yahoo group] Baseline issues in directly detected proton dimension of 13C-HSQC-NO
Baseline issues in directly detected proton dimension of 13C-HSQC-NO Hello everyone, I have a pair of 13C-HSQC-NOESY for two different proteins collected on a Varian instrument (gnoesyChsqcSE.c). Both have very severe rolling More...
NMRpipe Yahoo group news News from other NMR forums 0 07-12-2011 08:26 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:46 PM.


Map