BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 04-20-2012, 09:33 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Weak Lock Signals and Distorted NMR Spectra

Weak Lock Signals and Distorted NMR Spectra

A good 2H lock signal with a high signal-to-noise ratio is a real advantage for maintaining a stable magnetic field for long data acquisitions and also for shimming the magnet using the lock signal. Sometimes, however it is desirable to run NMR spectra for samples with only a only a very small quantity of deuterated solvent and therefore a very weak lock signal. Such may be the case when one is monitoring a chemical reaction by removing aliquots and adding a drop or two of a deuterated solvent to help with magnet shimming using the 2H lock signal. Although one may be able to shim a magnet using a very weak lock signal (with difficulty), running the spectrum locked may not be a good idea. Running a spectrum while locked on a very weak lock signal can lead to distortions in the spectrum. It is often better to use the weak lock signal to shim the magnet as best you can and then run the spectrum unlocked. This is demonstrated in the figure below.
The figure shows two single scan 1H NMR spectra of a sample of acetone (one drop) in CCl4 with a drop of CDCl3. The spectrum on the left was acquired using the 2H lock and the one on the right was acquired unlocked. One can clearly see the distortion in the 1H spectrum caused by locking on a very weak 2H signal.




Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMRpipe Yahoo group] Correct for a shifting lock
Correct for a shifting lock Hello all, In some interleaved relaxation experiments, we've noticed that one of our spectrometers is having trouble locking and the signals (FIDs) shift ever More...
NMRpipe Yahoo group news News from other NMR forums 0 02-06-2012 03:54 PM
[Question from NMRWiki Q&A forum] NMR Lock signal
NMR Lock signal THis is my lock signal....what is up with it, and what do I do?https://picasaweb.google.com/113100759436397078363/LockSignal02#slideshow/5631842657786659330 Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 07-21-2011 10:31 PM
[Question from NMRWiki Q&A forum] NMR resonance Lock
NMR resonance Lock I am running a varian gemini 300 on SUN microsystems with UNIX. I am trying to lock on my sample, and my lock is not showing up as a "step" as usual. Instead, it has troughs in it. What are some options in fixing this, or is this acceptable? -Jon K. Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 06-07-2011 01:01 AM
[NMR tweet] Accumulation of Spectra 1.1: Analyze nuclear magnetic resonance signals with this tool http://twurl.nl/4r2tn2
Accumulation of Spectra 1.1: Analyze nuclear magnetic resonance signals with this tool http://twurl.nl/4r2tn2 Published by soft82 (soft82) on 2011-03-25T14:16:35Z Source: Twitter
nmrlearner Twitter NMR 0 03-25-2011 02:21 PM
[NMR tweet] Accumulation of Spectra 1.1 (Freeware): Analyze nuclear magnetic resonance signals with this tool. http://bit.ly/eRGiZq
Accumulation of Spectra 1.1 (Freeware): Analyze nuclear magnetic resonance signals with this tool. http://bit.ly/eRGiZq Published by AlbertRio (Rio Alberto) on 2011-03-23T03:36:55Z Source: Twitter
nmrlearner Twitter NMR 0 03-23-2011 03:40 AM
[Question from NMRWiki Q&A forum] distorted DOSY ID
distorted DOSY ID Why are some Dosy spectra 1d so distorted?. How can this be overcome? Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 01-07-2011 12:10 PM
[NMR paper] Sorting signals from protein NMR spectra: SPI, a Bayesian protocol for uncovering spi
Sorting signals from protein NMR spectra: SPI, a Bayesian protocol for uncovering spin systems. Related Articles Sorting signals from protein NMR spectra: SPI, a Bayesian protocol for uncovering spin systems. J Biomol NMR. 2002 Nov;24(3):203-13 Authors: Grishaev A, Llinás M Grouping of spectral peaks into J-connected spin systems is essential in the analysis of macromolecular NMR data as it provides the basis for disentangling chemical shift degeneracies. It is a mandatory step before resonance and NOESY cross-peak identities can be...
nmrlearner Journal club 0 11-24-2010 08:58 PM
[Stan NMR blog] Field noise effects on NMR signals: FID's and 1D spectra
Field noise effects on NMR signals: FID's and 1D spectra An article about the effects of field noise on FID's and spectra. More...
nmrlearner News from NMR blogs 0 08-21-2010 06:14 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:57 PM.


Map