It is well known that the actual temperature of a sample in an NMR probe is not necessarily the same as that read from the variable temperature unit on the spectrometer. This is because the thermocouple used by the variable temperature unit is below the sample tube and not in the center of the rf coil where the NMR measurements are made. One normally must make a calibration plot for the actual temperature vs. the set temperature. For temperatures above room temperature this can be done by employing the known temperature dependent chemical shift difference between the two proton resonances of ethylene glycol (see this link). At temperatures below room temperature, the same measurement can be made for the known temperature dependent chemical shift difference between the two proton resonances of methanol. The actual temperature is determined from the chemical shift difference and plotted against the temperature read from the variable temperature unit. One potential problem with this method is that the resistance of the magnet shim coils change slightly with temperature affecting the shim currents and the NMR line shapes of the resonances. This makes it difficult to measure a precise chemical shift difference. In order to obtain reliable results, the magnet must be reshimmed at each temperature.
I have used is a very simple alternative method for calibrating the temperature of the sample compared to that of the variable temperature unit. This is illustrated in the figure below.A "sample" is prepared by pushing a NONMAGNETIC thermocouple through an NMR tube cap. The depth of the thermocouple is adjusted such that when the cap is put on the NMR tube, the tip of the thermocouple sits in the center of the rf coil. The NMR tube should contain a suitable liquid filled to the correct depth. The tube is placed in the spinner and set to the proper depth with a depth gauge. While holding onto the thermocouple, the sample is lowered into the magnet until it sits correctly in the NMR probe. The thermocouple is connected to a digital thermometer (some of these devices can use a second thermocouple in an ice water bath as a reference). The desired temperature is set on the variable temperature unit. When the temperature on both the variable temperature unit and digital thermometer have stabilized (~ 10 minutes), the values from each are recorded. This is repeated for temperatures over the desired temperature range and a calibration plot is constructed. Shimming is not an issue. Note that no NMR measurements are made and that the sample tube is not spinning.
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets
Abstract Chemical shifts reflect the structural environment of a certain nucleus and can be used to extract structural and dynamic information. Proper calibration is indispensable to extract such information from chemical shifts. Whereas a variety of procedures exist to verify the chemical shift calibration for proteins, no such procedure is available for RNAs to date. We present here a procedure to analyze and correct the calibration of 13C NMR data of RNAs. Our procedure uses five 13C chemical...
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01-21-2012 06:26 PM
Alternative SAIL-Trp for robust aromatic signal assignment and determination of the Ï?2 conformation by intra-residue NOEs
Alternative SAIL-Trp for robust aromatic signal assignment and determination of the Ï?2 conformation by intra-residue NOEs
Abstract Tryptophan (Trp) residues are frequently found in the hydrophobic cores of proteins, and therefore, their side-chain conformations, especially the precise locations of the bulky indole rings, are critical for determining structures by NMR. However, when analyzing -proteins, the observation and assignment of the ring signals are often hampered by excessive overlaps and tight spin couplings. These difficulties have been greatly alleviated by using...
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09-27-2011 07:04 AM
[MWClarkson blog] Alternative side-chain structures from methyl CPMG
Alternative side-chain structures from methyl CPMG
http://www.researchblogging.org/public/citation_icons/rb2_large_gray.pngAs I have mentioned before on this blog, the use of tools like CS-ROSETTA holds the promise of determining protein structures using only the chemical shifts of its backbone atoms. In addition to potentially making NOEs and RDCs redundant, this technology allows biologists to determine the conformations of minor members of the structural ensemble, which are very difficult to obtain using conventional approaches in population-dominated techniques like NMR and X-ray...
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06-21-2011 03:31 AM
Straightforward, effective calibration of SPINAL-64 decoupling results in the enhancement of sensitivity and resolution of biomolecular solid-state NMR.
Straightforward, effective calibration of SPINAL-64 decoupling results in the enhancement of sensitivity and resolution of biomolecular solid-state NMR.
Straightforward, effective calibration of SPINAL-64 decoupling results in the enhancement of sensitivity and resolution of biomolecular solid-state NMR.
J Magn Reson. 2010 Dec 31;
Authors: Comellas G, Lopez JJ, Nieuwkoop AJ, Lemkau LR, Rienstra CM
We describe a simple yet highly effective optimization strategy for SPINAL-64 (1)H decoupling conditions for magic-angle spinning solid-state NMR. With...
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02-08-2011 06:28 PM
Straightforward, effective calibration of SPINAL-64 decoupling results in the enhancement of sensitivity and resolution of biomolecular solid-state NMR
Straightforward, effective calibration of SPINAL-64 decoupling results in the enhancement of sensitivity and resolution of biomolecular solid-state NMR
Publication year: 2010
Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 31 December 2010</br>
Gemma, Comellas , Jakob J., Lopez , Andrew J., Nieuwkoop , Luisel R., Lemkau , Chad M., Rienstra</br>
We describe a simple yet highly effective optimization strategy for SPINAL-64 1H decoupling conditions for magic-angle spinning solid-state NMR. With adjustment of the phase angles in a coupled manner,...
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01-01-2011 08:57 AM
Design and characterization of a calixarene inclusion compound for calibration of lon
Design and characterization of a calixarene inclusion compound for calibration of long-range carbon-fluorine distance measurements by solid-state NMR.
Design and characterization of a calixarene inclusion compound for calibration of long-range carbon-fluorine distance measurements by solid-state NMR.
J Magn Reson. 2010 Aug 13;
Authors: Fowler DJ, Khalifah PG, Thompson LK
An inexpensive, easily synthesized calixarene:fluorotoluene host:guest inclusion complex has been designed for optimization and calibration of solid-state NMR measurements of...
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09-09-2010 10:41 AM
[NMR paper] Validation of a noninvasive method to measure brain temperature in vivo using 1H NMR
Validation of a noninvasive method to measure brain temperature in vivo using 1H NMR spectroscopy.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_120x27.gif Related Articles Validation of a noninvasive method to measure brain temperature in vivo using 1H NMR spectroscopy.
J Neurochem. 1995 Mar;64(3):1224-30
Authors: Corbett RJ, Laptook AR, Tollefsbol G, Kim B
The goal of this study was to evaluate the potential of using the difference between the 1H NMR...
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08-22-2010 03:41 AM
[NMR paper] 19F NMR magnetization transfer between 5-FBAPTA and its complexes. An alternative mea
19F NMR magnetization transfer between 5-FBAPTA and its complexes. An alternative means for measuring free Ca2+ concentration, and detection of complexes with protein in erythrocytes.
Related Articles 19F NMR magnetization transfer between 5-FBAPTA and its complexes. An alternative means for measuring free Ca2+ concentration, and detection of complexes with protein in erythrocytes.
NMR Biomed. 1994 Nov;7(7):330-8
Authors: Gilboa H, Chapman BE, Kuchel PW
The 19F NMR Ca(2+)-indicator molecule 5,5'-difluoro-1,2-bis(o-...