BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-08-2016, 05:14 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Static DNP-NMR Spectroscopy to Characterize Active Pharmaceutical Ingredients #DNPNMR

From The DNP-NMR Blog:

Static DNP-NMR Spectroscopy to Characterize Active Pharmaceutical Ingredients #DNPNMR

Dynamic Nuclear Polarization in general is no new method, but the focus of modern applications has initially been on bio-macromolecules under magic-angle-spinning (MAS) conditions.


One application that came out-of-the-blue was using DNP-NMR spectroscopy to study surface materials by DNP-NMR spectroscopy (for example Lafon et al., 2011) opening up a complete new research area within material science that traditionally struggled with very low signal-to-noise (S/N) ratios.


Even the application of DNP-NMR spectroscopy to study small molecules was not immediately evident, but as demonstrated in Rossini et al, 2012 DNP offers the possibility to record 13C correlation spectra of unlabeled molecules such as glucose in just 16 hours. Without DNP this experiment would require months of spectrometer time.


The majority of the DNP-NMR experiments that have been reported in recent years use gyrotron-based DNP-NMR systems and MAS-DNP probes operating at about 100 K. Alternatively, there is a small group of researchers that use DNP systems based on a solid-state microwave source. These systems have are typically limited by their output power, which ranges between >80 mW at 263 GHz (400 MHz 1H NMR) to < 200 mW at 197 GHz (300 MHz 1H NMR). At lower frequencies the output power increases and > 500 mW can be reached for systems operating at 95 GHz. A comprehensive overview of low-power DNP-NMR systems can be found in Siaw et al., 2016.


Because of the limited output power, DNP experiments are performed at temperatures < 20 K, which requires cooling with liquid helium (very common for example in EPR experiments) and can be cost-effective when using a cryostat (e.g. at 10 K the consumption is about 0.5 l/hr). Furthermore, with the increasing popularity of cryogen-free systems some cryostats don't require any liquid cryogens anymore for cooling. The main advantage is the reduced cost since a solid-state source based DNP-NMR system typically comes at a 10th of the cost of a gyrotron-based system.


At first sight it seems as if the applications of static DNP are very limited. However, when I was at ENC this year I listened to a talk by David A. Hirsh entitled "35Cl Dynamic Nuclear Polarization Solid-State NMR of Active Pharmaceutical Ingredients". David is a graduate student in the group of Rob Schurko, University of Windsor and gave a very nice talk on using DNP-NMR spectroscopy to characterize Active Pharmaceutical Ingredients (API) using 35Cl solid-state NMR spectroscopy. Since 35Cl is a quadrupole nucleus the corresponding NMR spectra are typically very broad. MAS does only have a small effect, mainly on the center transition, and traditionally wide-line spectra of static solids are recorded.


To overcome sensitivity issues, the group has developed pulse sequences such as WURST-CPMG or BRAIN-CP to rapidly record broad 35Cl patterns even at moderate magnetic field strengths (e.g. 9.4 T, 400 MHz 1H NMR). However, recording a single spectrum often requires several hours of signal averaging to achieve a sufficiently high signal-to-noise (S/N) ratio. With the aid of DNP these acquisition times can be dramatically reduced to just minutes. In his talk at ENC David described using a grytron-based DNP-NMR system, equipped with a MAS-DNP probe head in his experiments. Polarizing the sample is done while the rotor is spinning, but the rotor is stopped prior to recording the wide-line NMR spectrum.


This experiment seems to be ideally suited for a low-power DNP-NMR system for static solids, using a cryostat for sample cooling. This would greatly simplify the experiment because starting and stopping the rotor is not required anymore. Because the experiment is performed at much lower temperatures, there will be an additional boost in sensitivity and multi-dimensional correlation experiments should be possible, experiments that are close to impossible to perform without the aid of DNP.


In recent years the NMR community has witnessed the transition of DNP-NMR spectroscopy from an exotic method with a limited number of applications to a method with more and more applications. High-field DNP-NMR spectroscopy either based on a gyrotron or using a low-power solid-state source is still a very young method with many possibilities and I'm very excited to see what other applications lie in the future. I am however convinced that DNP-NMR spectroscopy will find their way into many more labs in the future and that the method will become an integral part of the NMR toolbox.


Go to The DNP-NMR Blog for more info.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Almost 1000 articles published for #DNPNMR spectroscopy in 2015
From The DNP-NMR Blog: Almost 1000 articles published for #DNPNMR spectroscopy in 2015 Dynamic Nuclear Polarization (DNP) enhanced NMR spectroscopy has gained tremendous interest in recent years. At least that is what we, the scientist in this research area, like to think. However, is it true? One way to find out is to look at the number of research papers published in the area. I love data mining and below is the result of my latest analysis. http://2.bp.blogspot.com/-Xd5yO1syCMQ/VqjUSf6SadI/AAAAAAAAI2E/SPsdmbC5hUY/s1600/DNPLiterature2015.png Although DNP was known from the...
nmrlearner News from NMR blogs 0 01-29-2016 04:20 PM
Dynamic nuclear polarization enhanced NMR spectroscopy for pharmaceutical formulations
From The DNP-NMR Blog: Dynamic nuclear polarization enhanced NMR spectroscopy for pharmaceutical formulations Rossini, A.J., et al., Dynamic nuclear polarization enhanced NMR spectroscopy for pharmaceutical formulations. J Am Chem Soc, 2014. 136(6): p. 2324-34. http://www.ncbi.nlm.nih.gov/pubmed/24410528
nmrlearner News from NMR blogs 0 03-07-2014 06:47 PM
[NMR paper] Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids.
Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids. J Magn Reson. 2013 Jun;231:5-14 Authors: Potapov A, Yau WM, Tycko R Abstract We explore the possibility of using dynamic nuclear polarization (DNP) to enhance signals in structural studies of biological solids by solid state NMR...
nmrlearner Journal club 0 01-11-2014 07:50 PM
Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids
From The DNP-NMR Blog: Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids Potapov, A., W.M. Yau, and R. Tycko, Dynamic nuclear polarization-enhanced (13)C NMR spectroscopy of static biological solids. J Magn Reson, 2013. 231(0): p. 5-14. http://www.ncbi.nlm.nih.gov/pubmed/23562665
nmrlearner News from NMR blogs 0 06-25-2013 12:17 AM
[NMR paper] Low resolution (1)H NMR assignment of proton populations in pound cake and its polymeric ingredients.
Low resolution (1)H NMR assignment of proton populations in pound cake and its polymeric ingredients. Related Articles Low resolution (1)H NMR assignment of proton populations in pound cake and its polymeric ingredients. Food Chem. 2013 Aug 15;139(1-4):120-8 Authors: Luyts A, Wilderjans E, Waterschoot J, Van Haesendonck I, Brijs K, Courtin CM, Hills B, Delcour JA Abstract Based on a model system approach, five different proton populations were distinguished in pound cake crumb using one dimensional low resolution (1)H NMR spectroscopy. In...
nmrlearner Journal club 0 04-09-2013 06:31 PM
Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids
Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids Available online 27 February 2013 Publication year: 2013 Source:Journal of Magnetic Resonance</br> </br> We explore the possibility of using dynamic nuclear polarization (DNP) to enhance signals in structural studies of biological solids by solid state NMR without sample spinning. Specifically, we use 2D 13C-13C exchange spectroscopy to probe the peptide backbone torsion angles (?,?) in a series of selectively 13C-labeled 40-residue ?-amyloid (A ?1-40) samples, in both fibrillar and...
nmrlearner Journal club 0 02-28-2013 07:57 PM
Quantitative NMR spectroscopy in pharmaceutical applications
Quantitative NMR spectroscopy in pharmaceutical applications Publication year: 2010 Source:Progress in Nuclear Magnetic Resonance Spectroscopy, Volume 57, Issue 2</br> Ulrike Holzgrabe</br> </br> </br></br>
nmrlearner Journal club 0 03-09-2012 09:16 AM
Quantitative NMR Spectroscopy in Pharmaceutical Applications
Quantitative NMR Spectroscopy in Pharmaceutical Applications Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 10 May 2010</br> Ulrike, Holzgrabe</br> More...
nmrlearner Journal club 0 08-16-2010 03:50 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 09:43 PM.


Map