BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-21-2010, 08:15 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Solid State NMR of Half Integer Quadrupolar Nuclei

Solid State NMR of Half Integer Quadrupolar Nuclei

Many students who do liquid state NMR or solid state NMR of spin I=1/2 nuclei have very little appreciation for the information content and complexity of the solid state NMR spectra of spin I = n/2 quadrupolar nuclei (n= 3, 5, 7....). In part, I think this may be due to the mathematics involved with explaining the important effects. With this post, I attempt to describe the NMR spectrum of an I = 5/2 nucleus in the soild state without resorting to mathematics. I hope that this post helps to boost the understanding and appreciation for the NMR spectra of these important nuclei.
When one collects the NMR spectrum a spin I = n/2 nucleus in solution, one normally observes a single NMR resonance line for each species as the (n+1) Zeeman energy levels are equally spaced and the nucleus is undergoing fast isotropic motion. The width of the resonance depends upon the efficiency of the relaxation (usually dominated by the quadrupolar interaction). The more efficient the relaxation, the broader the resonance. In many cases, the width of the resonance may be comparable to the complete chemical shift range for the nucleus and in some cases it may be so broad as to make its observation impractical or impossible. For these reasons I = n/2 quadrupolar nuclei generate less than their share of interest in liquid state NMR compared to spin I = 1/2 nuclei like 1H, 13C, 31P ..... etc.

In the solid state, the situation is much different as there is rarely fast isotropic motion. When the quadrupolar interaction is much less than the Zeeman interaction, the Zeeman energy level diagram is affected by both a first order and a second order quadrupolar perturbation as shown in the figure below for an I = 5/2 nucleus. The second order perturbation is much smaller than the first order.The energy levels are no longer equally spaced. Furthermore, the position of the resonances resulting from the transitions depends on the orientation of the nucleus with respect to the magnetic field. Since all orientations are represented equally in a powder sample, each transition gives a powder spectrum. This is illustrated on the right-hand side of the figure. Note that the m = 1/2 and m = -1/2 energy levels are affected equally to first order and that the central (m = 1/2 - m = -1/2) transition is affected only by the second order perturbation. As a result the line width of the resonance from the central transition is much narrower than the other transitions. (In the figure, the central transition is clipped significantly.). Unlike the first order interaction, the second order interaction is field dependent. The width of the central transition depends inversely on the strength of the magnetic field.

Magic angle spinning is a technique used by solid state NMR spectroscopists to obtain high resolution NMR spectra of solids. Magic angle spinning at infinite speed completely averages the first order quadrupolar interaction but only partially averages out the second order interaction. The energy level diagram for a spin I = 5/2 nucleus spinning infinately fast at the magic angle is shown in the figure below along with a simulated spectrum. The spectrum consists of a central transition, CT, and two satellite transitions, ST1 and ST2. Note that along with a lineshape due to the orientational dependence of the nucleus in the magnetic field, there is also an isotropic quadrupolar shift. The central and satallite transitions are not at the same frequency. This effect is completely separate from the chemical shift.

In practice, we cannot spin at infinite speed, however, we can often spin at a rate fast with respect to the width of the central transition. If the quadrupolar coupling constant is small enough, the central transition will be observed and affected only by the second order interaction. The satellite transitions, affected by both the first and second order interaction, are observed as a manifold of spinning sidebands. The intensity of the centerbands for the satellite transitions is greatly attenuated as the overall intensity is spread among all of the sidebands. Often the centerbands for the satellite transitions are so small in comparison to that of the central transition that they are not observed. This is illustrated with simulations in the lower portion of the figure below. For comparison, the upper portion shows similar simulated spectra without magic angle spinning. The spectra highlighted in yellow are expansions of the central portion of the spectrum. These simulations are also supported by observations.






Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Unequal quadrupolar splitting intensities
Hi everyone I'm running an experiment looking at a mesoporous organosilica soaked in benzene-d6. The pores are tubular and aligned more or less in the same direction, so the anisotropic environment causes quadrupolar splitting when looking at deuterium. However, the splitting intensities are not equal: the left peak tends to be noticeably larger (~10-20%) than the right. Have tried this with the sample at different orientations in the field. At some angles, such at 180 degrees, the peaks are nearly equal in intensity, but at the rest of them the left is higher. So my question is: what...
sir_manning NMR Questions and Answers 0 02-06-2012 06:33 PM
Rapid Solid-State NMR of Deuterated Proteins by Interleaved Cross-Polarization fromH andH Nuclei
Rapid Solid-State NMR of Deuterated Proteins by Interleaved Cross-Polarization fromH andH Nuclei Publication year: 2011 Source: Journal of Magnetic Resonance, Available online 9 November 2011</br> Morten*Bjerring, Berit*Paaske, Hartmut*Oschkinat, Umit*Akbey, Niels Chr.*Nielsen</br> We present a novel sampling strategy, interleaving acquisition of multiple NMR spectra by exploiting initial polarization subsequently fromH andH spins, taking advantage of their differentT1relaxation times. DifferentH- andH-polarization based spectra are in this way simultaneously recorded improving either...
nmrlearner Journal club 0 11-10-2011 07:38 AM
[Stan NMR blog] Integer Numbers C/C++ Macros
Integer Numbers C/C++ Macros Macros to test and handle integer numbers. Source: Stan blog library
nmrlearner News from NMR blogs 0 03-11-2011 04:59 AM
[NMR paper] Low temperature solid-state NMR experiments of half-integer quadrupolar nuclides: cav
Low temperature solid-state NMR experiments of half-integer quadrupolar nuclides: caveats and data analysis. Related Articles Low temperature solid-state NMR experiments of half-integer quadrupolar nuclides: caveats and data analysis. J Magn Reson. 2004 May;168(1):66-74 Authors: Lipton AS, Heck RW, Sears JA, Ellis PD Solid-state NMR spectroscopy of half-integer quadrupolar nuclides has received a lot of interest recently with the advent of new methodologies and higher magnetic fields. We present here the extension of our previous low...
nmrlearner Journal club 0 11-24-2010 09:51 PM
[Stan NMR blog] Half-integer nuclei?
Half-integer nuclei? A query about the use/abuse of the term "high half-integer spin" in NMR Source: Stan blog library
nmrlearner News from NMR blogs 0 11-23-2010 07:10 AM
[NMR paper] Soft-pulsed aluminum-27 quadrupolar central transition NMR studies of ovotransferrin
Soft-pulsed aluminum-27 quadrupolar central transition NMR studies of ovotransferrin http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Soft-pulsed aluminum-27 quadrupolar central transition NMR studies of ovotransferrin J Magn Reson. 1997 Dec;129(2):111-4 Authors: Aramini JM, Germann MW, Vogel HJ We have employed soft (Gaussian) pulses to examine 27Al NMR signals arising from Al3+ bound to ovotransferrin. In addition to enhancing the general detectability of 27Al...
nmrlearner Journal club 0 08-22-2010 05:08 PM
[NMR paper] Characterization of the N-terminal half-saturated state of calbindin D9k: NMR studies
Characterization of the N-terminal half-saturated state of calbindin D9k: NMR studies of the N56A mutant. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Characterization of the N-terminal half-saturated state of calbindin D9k: NMR studies of the N56A mutant. Protein Sci. 1995 Jun;4(6):1045-55 Authors: Wimberly B, Thulin E,...
nmrlearner Journal club 0 08-22-2010 03:41 AM
[Stan NMR blog] Half-integer nuclei?
Half-integer nuclei? A query about the use/abuse of the term "high half-integer spin" in NMR More...
nmrlearner News from NMR blogs 0 08-21-2010 05:42 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:19 PM.


Map