Shimon D, Hovav Y, Kaminker I, Feintuch A, Goldfarb D, Vega S. Simultaneous DNP enhancements of (1)H and (13)C nuclei: theory and experiments. Phys Chem Chem Phys. 2015;17(17):11868-83.
DNP on heteronuclear spin systems often results in interesting phenomena such as the polarization enhancement of one nucleus during MW irradiation at the "forbidden" transition frequencies of another nucleus or the polarization transfer between the nuclei without MW irradiation. In this work we discuss the spin dynamics in a four-spin model system of the form {ea-eb-((1)H,(13)C)}, with the Larmor frequencies omegaa, omegab, omegaH and omegaC, by performing Liouville space simulations. This spin system exhibits the common (1)H solid effect (SE), (13)C cross effect (CE) and in addition high order CE-DNP enhancements. Here we show, in particular, the "proton shifted (13)C-CE" mechanism that results in (13)C polarization when the model system, at one of its (13)C-CE conditions, is excited by a MW field at the zero quantum or double quantum electron-proton transitions omegaMW = omegaa +/- omegaH and omegaMW = omegab +/- omegaH. Furthermore, we introduce the "heteronuclear" CE mechanism that becomes efficient when the system is at one of its combined CE conditions |omegaa - omegab| = |omegaH +/- omegaC|. At these conditions, simulations of the four-spin system show polarization transfer processes between the nuclei, during and without MW irradiation, resembling the polarization exchange effects often discussed in the literature. To link the "microscopic" four-spin simulations to the experimental results we use DNP lineshape simulations based on "macroscopic" rate equations describing the electron and nuclear polarization dynamics in large spin systems. This approach is applied based on electron-electron double resonance (ELDOR) measurements that show strong (1)H-SE features outside the EPR frequency range. Simulated ELDOR spectra combined with the indirect (13)C-CE (iCE) mechanism, result in additional "proton shifted (13)C-CE" features that are similar to the experimental ones. These features are also observed experimentally in (13)C-DNP spectra of a sample containing 15 mM of trityl in a glass forming solution of (13)C-glycerol/H2O and are analyzed by calculating the basic (13)C-SE and (13)C-iCE shapes using simulated ELDOR spectra that were fitted to the experimental ones.
[NMR paper] Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.
Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.
Related Articles Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.
J Biomol NMR. 2015 Mar 7;
Authors: Gopinath T, Mote KR, Veglia G
Abstract
We present a new method called DAISY (Dual Acquisition orIented ssNMR spectroScopY) for the simultaneous acquisition of 2D and 3D oriented solid-state NMR experiments for membrane...
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03-10-2015 07:22 PM
Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples
Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples
Abstract
We present a new method called DAISY (Dual Acquisition orIented ssNMR spectroScopY) for the simultaneous acquisition of 2D and 3D oriented solid-state NMR experiments for membrane proteins reconstituted in mechanically or magnetically aligned lipid bilayers. DAISY utilizes dual acquisition of sine and cosine dipolar or chemical shift coherences and long living 15N longitudinal polarization to obtain two...
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03-08-2015 01:07 AM
HNCA+, HNCO+, and HNCACB+ experiments: improved performance by simultaneous detection of orthogonal coherence transfer pathways
HNCA+, HNCO+, and HNCACB+ experiments: improved performance by simultaneous detection of orthogonal coherence transfer pathways
Abstract
Three experiments, BESTâ??TROSY HNCA+, HNCO+ and HNCACB+ are presented for sequential backbone resonance assignment of 13C, 15N labelled proteins. The novelty of these experiments with respect to conventional pulse sequences is the detection of additional orthogonal coherence transfer pathways that results in enhanced sensitivity for sequential correlations without significantly compromising the intensity of...
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07-25-2014 03:12 AM
Pairwise binding competition experiments for sorting hub-protein/effector interaction hierarchy and simultaneous equilibria
Pairwise binding competition experiments for sorting hub-protein/effector interaction hierarchy and simultaneous equilibria
Abstract
NMR experiments on proteins in simultaneous equilibria with multiple binding partners can provide a tool to understand complex biological interaction networks. Competition among proteins for binding to signaling hubs is often at the basis of the information transmission across signaling networks in every organism. Changes in affinity towards one or more partners, as well as changes of the relative concentration of the...
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07-12-2014 06:07 PM
3D DUMAS: Simultaneous acquisition of three-dimensional magic angle spinning solid-state NMR experiments of proteins
3D DUMAS: Simultaneous acquisition of three-dimensional magic angle spinning solid-state NMR experiments of proteins
July 2012
Publication year: 2012
Source:Journal of Magnetic Resonance, Volume 220</br>
</br>
Using the DUMAS (Dual acquisition Magic Angle Spinning) solid-state NMR approach, we created new pulse schemes that enable the simultaneous acquisition of three dimensional (3D) experiments on uniformly 13C, 15N labeled proteins. These new experiments exploit the simultaneous cross-polarization (SIM-CP) from 1H to 13C and 15N to acquire two 3D experiments...
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02-03-2013 10:13 AM
3D DUMAS: Simultaneous Acquisition of Three-Dimensional Magic Angle Spinning Solid-State NMR Experiments of Proteins
3D DUMAS: Simultaneous Acquisition of Three-Dimensional Magic Angle Spinning Solid-State NMR Experiments of Proteins
Publication year: 2012
Source:Journal of Magnetic Resonance</br>
T. Gopinath, Gianluigi Veglia</br>
Using the DUMAS (Dual acquisition Magic Angle Spinning) solid-state NMR approach, we created new pulse schemes that enable the simultaneous acquisition of three dimensional (3D) experiments on uniformly 13C, 15N labeled proteins. These new experiments exploit the simultaneous cross-polarization (SIM-CP) from 1H to 13C and 15N to acquire two 3D experiments...
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04-26-2012 08:10 PM
Simultaneous convection compensation and solvent suppression in biomolecular NMR diffusion experiments
Simultaneous convection compensation and solvent suppression in biomolecular NMR diffusion experiments
Abstract Thermal convection and high intensity solvent resonances can significantly hamper diffusion estimates in pulsed gradient spin-echo nuclear magnetic resonance diffusion experiments on biomolecule samples. To overcome these two problems, a new double functional NMR diffusion sequence, double echo PGSTE-WATERGATE, is presented. The new sequence provides excellent convection compensation and solvent suppression (with a suppression factor in excess of at least 105 in a single scan)...
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01-09-2011 12:46 PM
[NMR paper] K(+)-ribosome interactions determine the large enhancements of 39K NMR transverse rel
K(+)-ribosome interactions determine the large enhancements of 39K NMR transverse relaxation rates in the cytoplasm of Escherichia coli K-12.
Related Articles K(+)-ribosome interactions determine the large enhancements of 39K NMR transverse relaxation rates in the cytoplasm of Escherichia coli K-12.
Biochemistry. 1995 Jan 31;34(4):1393-404
Authors: Guttman HJ, Cayley S, Li M, Anderson CF, Record MT
As a probe of physical chemical properties of the intracellular environment, we measured 39K NMR transverse relaxation rates in concentrated cell...