BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 01-07-2011, 12:01 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Sample Slice Selection in NMR Spectroscopy

Sample Slice Selection in NMR Spectroscopy

In MRI, field gradients are used routinely for slice selection while imaging a sample. Gradients are also finding applications in high resolution NMR spectroscopy employing fast data collection techniques using parallel data acquisition for multiple slices of the same sample. A good example of this can be found in Carlos' BLOG (and the references therein). The slice selection is accomplished by turning on a linear field gradient across the sample while applying an excitation pulse. While the gradient is on, the frequencies of each of the NMR resonances is spread out according to length of the sample and the strength of the field gradient across the sample. A particular individual slice of the sample can be selected by either modifying the strength of the gradient while using a semi-selective pulse of a given excitation frequency or by modifying the offset frequency of the semi-selective pulse for a constant gradient strength. Both the gradient strength and the excitation profile of the pulse determine the thickness of the slice selected. When the gradient is turned off and the receiver turned on, the FID representing only the spectrum of the selected slice of the sample is collected. An educational example is shown in the figure below. A sample of toluene and H2O/D2O was prepared. As these two liquids are immiscible, the sample is layered with the less dense toluene on top and the more dense water on the bottom. The bottom trace in the figure shows a conventional 1H NMR spectrum. Since the pulse used to collect the spectrum was a hard 90° pulse with a wide excitation profile, one can see both the toluene and the water in the spectrum. For the middle and upper traces, a field gradient of 48 G/cm was turned on while a 100 µs 90° Gaussian excitation pulse was applied. The only difference between the middle and upper traces is the offset frequency used in the excitation pulse. The middle trace represents the spectrum of a slice of the water in the bottom layer of the sample and the upper trace represents the spectrum of a slice of the toluene in the top layer of the sample.



Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] 2DNOESY with N15 C13 Labelled sample or Unlabelled sample
2DNOESY with N15 C13 Labelled sample or Unlabelled sample Dear Friends, I am in process of doing structure calculation of dimeric protein 22kD by using ARIA2.2 . Can I acquire 2DNOESY spectrum for my protein. Will it provide useful information for structure calculation? And whether I should acquire 2DNOESY with N15 C13 Labelled sample or Unlabelled sample . Which sample would be appropriate for this kind of experiment on VNMRJ 700 with biopack ? Thanks & Regards Srinivas Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 02-06-2012 03:54 PM
[NMRpipe Yahoo group] Re: File selection dialog problem in TCL scripts
Re: File selection dialog problem in TCL scripts HUZZAH!!! we posted an update which should fix this. More...
NMRpipe Yahoo group news News from other NMR forums 0 09-01-2011 07:23 PM
[NMRpipe Yahoo group] Re: File selection dialog problem in TCL scripts
Re: File selection dialog problem in TCL scripts Oh waily waily waily! Yes, I've seen this problem before, but like our other favorite X11-based Mac OS X problems, it doesn't happen on every system. In the More...
NMRpipe Yahoo group news News from other NMR forums 0 07-26-2011 11:22 PM
[NMRpipe Yahoo group] File selection dialog problem in TCL scripts
File selection dialog problem in TCL scripts I recently updated my old (2007) NMRPipe installation, and now I have a problem selecting input files with any Tcl (or NMRWish) script. As far as I can tell, More...
NMRpipe Yahoo group news News from other NMR forums 0 07-25-2011 11:10 PM
1H Assisted 13C/15N Heteronuclear Correlation Spectroscopy in Oriented Sample Solid-State NMR of Single Crystal and Magnetically Aligned Samples
1H Assisted 13C/15N Heteronuclear Correlation Spectroscopy in Oriented Sample Solid-State NMR of Single Crystal and Magnetically Aligned Samples Publication year: 2011 Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 9 April 2011</br> Eugene C., Lin , Stanley J., Opella</br> 1H-irradiation under mismatched Hartmann-Hahn conditions provides an alternative mechanism for carrying out 15N/13C transfers in triple-resonance heteronuclear correlation spectroscopy (HETCOR) on stationary samples of single crystals and aligned samples of biopolymers, which...
nmrlearner Journal club 0 04-10-2011 12:52 PM
1H Assisted 13C/15N Heteronuclear Correlation Spectroscopy in Oriented Sample Solid-State NMR of Single Crystal and Magnetically Aligned Samples
1H Assisted 13C/15N Heteronuclear Correlation Spectroscopy in Oriented Sample Solid-State NMR of Single Crystal and Magnetically Aligned Samples Publication year: 2011 Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 9 April 2011</br> Eugene C., Lin , Stanley J., Opella</br> 1H-irradiation under mismatched Hartmann-Hahn conditions provides an alternative mechanism for carrying out 15N/13C transfers in triple-resonance heteronuclear correlation spectroscopy (HETCOR) on stationary samples of single crystals and aligned samples of biopolymers, which...
nmrlearner Journal club 0 04-10-2011 12:42 PM
[NMR paper] Rapid sample-mixing technique for transient NMR and photo-CIDNP spectroscopy: applica
Rapid sample-mixing technique for transient NMR and photo-CIDNP spectroscopy: applications to real-time protein folding. Related Articles Rapid sample-mixing technique for transient NMR and photo-CIDNP spectroscopy: applications to real-time protein folding. J Am Chem Soc. 2003 Oct 15;125(41):12484-92 Authors: Mok KH, Nagashima T, Day IJ, Jones JA, Jones CJ, Dobson CM, Hore PJ We describe the development and application of a novel rapid sample-mixing technique for real-time NMR (nuclear magnetic resonance) spectroscopy. The apparatus consists...
nmrlearner Journal club 0 11-24-2010 09:16 PM
Sample cell for Nuclear Magnetic Resonance (NMR) spectroscopy.
http://farm4.static.flickr.com/3509/3920569379_1d75126b15.jpg Sample cell for Nuclear Magnetic Resonance (NMR) spectroscopy. More...
nmrlearner NMR pictures 0 08-18-2010 01:12 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 09:16 AM.


Map