BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 01-06-2015, 07:59 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default PhD studentship available at the University of Cambridge, UK (Kevin Brindle Lab

From The DNP-NMR Blog:

PhD studentship available at the University of Cambridge, UK (Kevin Brindle Lab

PhD studentship available at the University of Cambridge, UK (Kevin Brindle Lab):




Monitoring tumour responses to treatment using hyperpolarized magnetic resonance imaging




Kevin M. Brindle
Department of Biochemistry, University of Cambridge
Tennis Court Road, Cambridge CB2 1GA
and
Cancer Research UK Cambridge Research Institute, Li Ka Shing Centre,
Robinson Way, Cambridge, CB2 0RE


Patients with similar tumour types can show markedly different responses to the same therapy. The development of new treatments would benefit, therefore, from the introduction of imaging methods that allow an early assessment of treatment response in individual patients, allowing rapid selection of the most effective treatment [1].


We have been developing methods for detecting the early responses of tumours to therapy, including magnetic resonance (MR) imaging of tumour cell metabolism using hyperpolarized 13C-labelled cellular metabolites. Nuclear spin hyperpolarization can increase sensitivity in the MR experiment by >10,000x. This has allowed us to image the location of labelled cell substrates in vivo and, more importantly, their metabolic conversion into other metabolites. These substrates include pyruvate [2], lactate [3], glutamine [4], glutamate [5], fumarate [6], bicarbonate [7] and ascorbate [8] and glucose [9]. Exchange of hyperpolarized 13C label between lactate and pyruvate can be imaged in models of lymphoma and glioma and this flux is decreased post-treatment [2,10]. Hyperpolarized [1,4-13C]fumarate can be used to detect tumour cell necrosis post treatment in lymphoma [6] and both the polarized pyruvate and fumarate experiments can detect early evidence of treatment response in a breast tumour model [11] and also early responses to anti-vascular [12] and anti-angiogenic drugs [13]. Tissue pH can be imaged from the ratio of the signal intensities of hyperpolarized H13CO3- and 13CO2 following intravenous injection of hyperpolarized H13CO3¯ [7] and tumour redox state can be determined by monitoring the oxidation and reduction of [1-13C]ascorbate and [1-13C]dehydroascorbate respectively [8]. Tumour glycolysis can be monitored by measuring the conversion of hyperpolarized [U-2H, U-13C]glucose to lactate and this flux was shown to decrease post-treatment [9].


We have recently obtained funding for clinical trials with polarised pyruvate and fumarate to detect treatment response in lymphoma, glioma and breast cancer patients.


The aim of this studentship is to further develop this technique. This will include investigation of other cell substrates and other ways in which the technique can be used to monitor tumour progression and response to treatment. The student will learn a variety of techniques, including magnetic resonance imaging and spectroscopy; metabolic biochemistry, particularly as it relates to oncology; tumour cell biology and molecular biology.


References




1. Brindle, K., Nature Rev Cancer, 8, 94-107 (2008)
2. Day, S.E., et al., Nature Med, 13, 1382-1387 (2007)
3. Kennedy, B.W.C., et al., J Am Chem Soc, 134, 4969-4977 (2012)
4. Gallagher, F., et al., Magn. Reson. Med., 60, 253-257 (2008)
5. Gallagher, F., et al., Magn Reson Med, 66, 18-23 (2011)
6. Gallagher, F.A., et al., Proc Natl Acad Sci U S A, 106, 19801-19806 (2009)
7. Gallagher, F., et al., Nature, 453, 940-943 (2008)
8. Bohndiek, S.E., et al., J Am Chem Soc, 133, 11795-11801 (2011)
9. Rodrigues, T.B., et al., Nat Med, 20, 93-97 (2014)
10. Day, S.E., et al., Magn Reson Med, 65, 557-563 (2011)
11. Witney, T.H., et al., Brit. J. Cancer, 103, 1400-1406 (2010)
12. Bohndiek, S.E., et al., Molecular Cancer Therapeutics, 9, 3278-3288 (2010)
13. Bohndiek, S.E., et al., Cancer Research, 72, 854-864 (2012)


--


Tiago B. Rodrigues, PhD
Phone: +44 (0) 1223 769724
Fax: +44 (0) 1223 769510
E-mail: Tiago.Rodrigues@cruk.cam.ac.uk


CRUK Cambridge Institute,
University of Cambridge,
Li Ka Shing Centre,
Robinson Way,
Cambridge CB2 0RE
United Kingdom
http://www.cambridgecancer.org.uk/


====================================
This is the AMPERE MAGNETIC RESONANCE mailing list:
http://www.drorlist.com/nmrlist.html


NMR web database:
http://www.drorlist.com/nmr.html


Go to The DNP-NMR Blog for more info.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR tweet] Nuclear Magnetic Resonance Scientist (NMR) - Cambridge - Cambridge Un... http://jobsurl.com/gyGK
Nuclear Magnetic Resonance Scientist (NMR) - Cambridge - Cambridge Un... http://jobsurl.com/gyGK Published by ScienceJob (Science Jobs) on 2010-12-04T17:50:20Z Source: Twitter
nmrlearner Twitter NMR 0 12-04-2010 05:54 PM
Nuclear Magnetic Resonance Scientist (NMR) - Cambridge, Cambridge http://ff.im/-s6pDM
Nuclear Magnetic Resonance Scientist (NMR) - Cambridge, Cambridge http://ff.im/-s6pDM Published by HealthSafetyJob (Health & Safety Jobs) on 2010-10-15T18:14:47Z Source: Twitter
nmrlearner Job marketplace 0 10-15-2010 06:32 PM
Featured Job: Nuclear Magnetic Resonance Scientist (NMR) - Cambridge, Cambridge: Nucl
Featured Job: Nuclear Magnetic Resonance Scientist (NMR) - Cambridge, Cambridge: Nuclear Magnetic Resonance S... http://bit.ly/dndNWA #Jobs Published by Medical_Jobs_UK (Medical Jobs UK) on 2010-10-15T17:07:56Z Source: Twitter
nmrlearner Job marketplace 0 10-15-2010 05:16 PM
[NMR tweet] Nuclear Magnetic Resonance Scientist (NMR) - Cambridge - Cambridge Un... http://jobs
Nuclear Magnetic Resonance Scientist (NMR) - Cambridge - Cambridge Un... http://jobsurl.com/gyGK Published by ScienceJob (Science Jobs) on 2010-10-06T15:11:05Z Source: Twitter
nmrlearner Twitter NMR 0 10-06-2010 03:27 PM
Nuclear Magnetic Resonance Scientist (NMR) - Cambridge, Cambridge http://ff.im/-rAK6C
Nuclear Magnetic Resonance Scientist (NMR) - Cambridge, Cambridge http://ff.im/-rAK6C Published by HealthSafetyJob (Health & Safety Jobs) on 2010-10-05T17:21:18Z Source: Twitter
nmrlearner Job marketplace 0 10-05-2010 05:40 PM
PhD studentship, Massey University, New Zealand
PhD studentship, Massey University, New Zealand PhD studentship, Massey University, New Zealand A PhD studentship is available to apply state-of-the-art NMR techniques, along with other biophysical approaches and computational analyses, to protein and RNA structure and dynamics. This project is a collaboration with the University of Sydney, where complementary Small Angle X-ray Scattering (SAXS) studies will be performed, and with the New York Structural Biology Center, which houses spectrometers up to 900 MHz. The Massey University Centre for Structural Biology houses a 700 MHz Bruker...
nmrlearner Job marketplace 0 09-01-2010 10:56 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:45 AM.


Map