Stan NMR blog NMR Sensitivity: Novel Approaches and Perspectives

		BioNMR > NMR community > News from NMR blogs
[Stan NMR blog] NMR Sensitivity: Novel Approaches and Perspectives

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-21-2010, 06:14 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Sensitivity: Novel Approaches and Perspectives

NMR Sensitivity: Novel Approaches and Perspectives

An article about perspective improvements of S/N ratio.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Exploring NMR ensembles of calcium binding proteins: perspectives to design inhibitors of protein-protein interactions. Exploring NMR ensembles of calcium binding proteins: perspectives to design inhibitors of protein-protein interactions. Exploring NMR ensembles of calcium binding proteins: perspectives to design inhibitors of protein-protein interactions. BMC Struct Biol. 2011 May 12;11(1):24 Authors: Isvoran A, Badel A, Craescu CT, Miron S, Miteva MA ABSTRACT: BACKGROUND: Disrupting protein-protein interactions by small organic molecules is nowadays a promising strategy employed to block protein targets involved in different pathologies. However, structural...	nmrlearner	Journal club	0	05-17-2011 06:21 PM
Exploring NMR ensembles of calcium binding proteins: perspectives to design ... - 7thSpace Interactive (press release) Exploring NMR ensembles of calcium binding proteins: perspectives to design ... - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> Exploring NMR ensembles of calcium binding proteins: perspectives to design ... 7thSpace Interactive (press release) We employed several scoring methods in order to find the best protein conformations. Our results show that docking on NMR structures of calmodulin and centrin can be very helpful to take into account conformational changes occurring at protein-protein ... Read here	nmrlearner	Online News	0	05-13-2011 07:41 AM
Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a m Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a model system. Related Articles Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a model system. Prog Nucl Magn Reson Spectrosc. 2010 May;56(4):346-59 Authors: Kato K, Yamaguchi Y, Arata Y	nmrlearner	Journal club	0	10-19-2010 04:51 PM
[BMNRC community] Perspectives on NMR in drug discovery: a technique comes of age Perspectives on NMR in drug discovery: a technique comes of age http://www.nature.com/nrd/journal/v7/n9/abs/nrd2606.html Nature Reviews Drug Discovery 7, 738-745 (September 2008) \| doi:10.1038/nrd2606 Go to BMNRC community to find more info about this topic.	nmrlearner	News from other NMR forums	0	09-02-2010 04:59 AM
[NMR paper] NMR and crystallography--complementary approaches to structure determination. NMR and crystallography--complementary approaches to structure determination. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR and crystallography--complementary approaches to structure determination. Trends Biotechnol. 1994 May;12(5):149-53 Authors: MacArthur MW, Driscoll PC, Thornton JM A knowledge of the three-dimensional structure of a protein is essential to understand how a protein performs its functions. It is also a prime requirement for the rational design...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] NMR and crystallography--complementary approaches to structure determination. NMR and crystallography--complementary approaches to structure determination. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles NMR and crystallography--complementary approaches to structure determination. Trends Biotechnol. 1994 May;12(5):149-53 Authors: MacArthur MW, Driscoll PC, Thornton JM A knowledge of the three-dimensional structure of a protein is essential to understand how a protein performs its functions. It is also a prime requirement for the rational design...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] 1H- and 19F-NMR approaches to the study of the structure of proteins larger than 25 k 1H- and 19F-NMR approaches to the study of the structure of proteins larger than 25 kDa. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles 1H- and 19F-NMR approaches to the study of the structure of proteins larger than 25 kDa. Int J Biol Macromol. 1994 Oct;16(5):227-35 Authors: Gettins PG The three-dimensional solution structures of proteins larger than about 25 kDa cannot at present be determined by multi-dimensional nuclear magnetic resonance (NMR) methods. However,...	nmrlearner	Journal club	0	08-22-2010 03:29 AM
Approaches to the assignment of 19F resonances from 3-fluorophenylalanine labeled cal Abstract Traditional single site replacement mutations (in this case, phenylalanine to tyrosine) were compared with methods which exclusively employ 15N and 19F-edited two- and three-dimensional NMR experiments for purposes of assigning 19F NMR resonances from calmodulin (CaM), biosynthetically labeled with 3-fluorophenylalanine (3-FPhe). The global substitution of 3-FPhe for native phenylalanine was tolerated in CaM as evidenced by a comparison of 1H-15N HSQC spectra and calcium binding assays in the presence and absence of 3-FPhe. The 19F NMR spectrum reveals six resolved resonances, one...	nmrlearner	Journal club	0	08-14-2010 04:19 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off