BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 09-09-2017, 02:06 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Near-unity nuclear polarization with an open-source 129Xe hyperpolarizer for NMR and MRI

From The DNP-NMR Blog:

Near-unity nuclear polarization with an open-source 129Xe hyperpolarizer for NMR and MRI

p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica}
Already a bit older this article, but still a good read.




Nikolaou, P., et al., Near-unity nuclear polarization with an open-source 129Xe hyperpolarizer for NMR and MRI. Proc. Nat. Aca. Sci. USA, 2013. 110(35): p. 14150-14155.


http://www.pnas.org/content/110/35/14150.abstract


The exquisite NMR spectral sensitivity and negligible reactivity of hyperpolarized xenon-129 (HP129Xe) make it attractive for a number of magnetic resonance applications; moreover, HP129Xe embodies an alternative to rare and nonrenewable 3He. However, the ability to reliably and inexpensively produce large quantities of HP129Xe with sufficiently high 129Xe nuclear spin polarization (PXe) remains a significant challenge—particularly at high Xe densities. We present results from our “open-source” large-scale (~1 L/h) 129Xe polarizer for clinical, preclinical, and materials NMR and MRI research. Automated and composed mostly of off-the-shelf components, this “hyperpolarizer” is designed to be readily implementable in other laboratories. The device runs with high resonant photon flux (up to 200 W at the Rb D1 line) in the xenon-rich regime (up to 1,800 torr Xe in 500 cc) in either single-batch or stopped-flow mode, negating in part the usual requirement of Xe cryocollection. Excellent agreement is observed among four independent methods used to measure spin polarization. In-cell PXe values of ~90%, ~57%, ~50%, and ~30% have been measured for Xe loadings of ~300, ~500, ~760, and ~1,570 torr, respectively. PXe values of ~41% and ~28% (with ~760 and ~1,545 torr Xe loadings) have been measured after transfer to Tedlar bags and transport to a clinical 3 T scanner for MR imaging, including demonstration of lung MRI with a healthy human subject. Long “in-bag” 129Xe polarization decay times have been measured (T1 ~38 min and ~5.9 h at ~1.5 mT and 3 T, respectively)—more than sufficient for a variety of applications.
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} span.s1 {font: 12.0px 'Apple Symbols'}

Go to The DNP-NMR Blog for more info.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Web-based open-source program determines protein structures - Phys.Org
http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcRMjjiDYoC1gRT4ryqQg78TxjB352Vp8j4HLsjxty5D7csuBaQngL0mHByWUnMY_6n-SiPKRtH7 Phys.Org <img alt="" height="1" width="1"> Web-based open-source program determines protein structures Phys.Org In particular, experts in nuclear magnetic resonance spectroscopy, which is highly complementary to X-ray crystallography." He also advocates that biologists develop more awareness of the importance of structural biology for their research. "Wisely ... Web-based open-source program determines protein structures - Phys.Org
nmrlearner Online News 0 05-09-2017 01:16 PM
#VnmrJ is now open source
From The DNP-NMR Blog: #VnmrJ is now open source I'm very pleased to learn that VnmrJ is now open source. The project is hosted on GitHub and detailed information is accessible through: http://openvnmrj.org Before you want to change to the OpenVnmrJ you should read this:
nmrlearner News from NMR blogs 0 01-09-2016 01:07 AM
[NMR paper] Detecting a New Source for Photochemically Induced Dynamic Nuclear Polarization in the LOV2 Domain of Phototropin by Magnetic-Field Dependent (13)C-NMR Spectroscopy.
Detecting a New Source for Photochemically Induced Dynamic Nuclear Polarization in the LOV2 Domain of Phototropin by Magnetic-Field Dependent (13)C-NMR Spectroscopy. Related Articles Detecting a New Source for Photochemically Induced Dynamic Nuclear Polarization in the LOV2 Domain of Phototropin by Magnetic-Field Dependent (13)C-NMR Spectroscopy. J Phys Chem B. 2014 Sep 10; Authors: Kothe G, Lukaschek M, Link G, Kacprzak S, Illarionov B, Fischer M, Eisenreich W, Bacher A, Weber S Abstract Phototropin is a flavin mononucleotide...
nmrlearner Journal club 0 09-11-2014 02:54 PM
rNMR: Open Source Software for NMR Data Analysis
rNMR: Open Source Software for NMR Data Analysis Software for HTP NMR of small molecules More...
nmrlearner General 0 06-05-2013 06:53 PM
CONNJUR spectrum translator: an open source application for reformatting NMR spectral data
CONNJUR spectrum translator: an open source application for reformatting NMR spectral data Abstract NMR spectroscopists are hindered by the lack of standardization for spectral data among the file formats for various NMR data processing tools. This lack of standardization is cumbersome as researchers must perform their own file conversion in order to switch between processing tools and also restricts the combination of tools employed if no conversion option is available. The CONNJUR Spectrum Translator introduces a new, extensible architecture for spectrum translation and introduces two...
nmrlearner Journal club 0 03-18-2011 06:51 PM
CONNJUR - open source integration environment for biomolecular NMR data analysis
CONNJUR Project website The CONNJUR Project is developing an open source integration environment for biomolecular NMR data analysis. CONNJUR software is a workflow generator, based on legacy NMR analysis applications, that is being developed as Open Source Software -- it is perpetually free for anyone to use, modify and distribute. CONNJUR is developed by a community of NMR spectroscopists and scientific programmers who aim to create and maintain NMR analysis tools bounded by the goals of excellent end-product, free of charge, open source software using the...
markber NMR software 0 11-01-2010 07:45 PM
[NMR software blog] Open Source NMR freeware
Open Source NMR freeware Most of the readers arrive here using Google, without knowing me and my blog. Usually they get very angry because they arrive... on the trapping post I wrote 3 years ago! I want to do something to keep them glad... So you want "open source" stuff? Do you know what it really means? Are you ready to compile, test, debug it and add a graphic interface to it? Just because you asked for it, here is a list of available projects. If you know other links, add them into a comment. CCPN NPK matNMR ProSpectND
nmrlearner News from NMR blogs 0 08-21-2010 06:29 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 03:10 PM.


Map