The stereochemistry of compounds is assigned very often with proton - proton NOE's by applying the 2D NOESY technique or the 1D selective gradient NOESY technique. These methods fail, however when the distance between protons is too large to measure an NOE. When faced with this situation, it may be possible to measure long range proton - carbon coupling constants which are able to provide the necessary information. Three-bond carbon - proton couplings follow a Karplus relationship where the magnitude of the coupling constant is related to the dihedral angle between the carbon and the proton. In some cases, these dihedral angles may be used to assign the stereochemistry. Coupling constants are largest for dihedral angles of 0° and 180° and smallest for dihedral angles of 90°. The simplest way to measure the long range coupling constants is to collect a 13C NMR spectrum without 1H decoupling. These spectra can be very complicated as can be seen from the figure below showing the C2 and C3 aromatic carbons of toluene.
Extracting specific long range carbon - proton coupling constants is quite tedious. One way to simplify matters and obtain specific carbon - proton coupling constants is to apply the selective 2D heteronuclear J-resolved technique first introduced by Bax and Freeman in 1982 (JACS 104, 1099). This method employs a 13C spin echo with a selective 1H 180° pulse applied simultaneously with the 13C nonselective 180° pulse. A version of this sequence is shown in the figure below with a shaped adiabatic 13C 180° pulse.
In this sequence one obtains a 2D spectrum with 13C in the F2 domain and the long range couplings to the selectively inverted proton in the F1 domain. An example is shown in the figure below for toluene where the methyl protons were selectively inverted with a 20 msec Gaussian pulse.
All of the carbons coupled to the methyl protons are split into quartets in the F1 domain and the long range coupling constants which were very difficult to obtain from the coupled 13C spectrum can simply be read directly from the 2D spectrum.
On the calculation of 3Jαβ-coupling constants for side chains in proteins
On the calculation of 3Jαβ-coupling constants for side chains in proteins
Abstract Structural knowledge about proteins is mainly derived from values of observables, measurable in NMR spectroscopic or X-ray diffraction experiments, i.e. absorbed or scattered intensities, through theoretically derived relationships between structural quantities such as atom positions or torsional angles on the one hand and observable quantities such as squared structure factor amplitudes, NOE intensities or 3 J-coupling constants on the other. The standardly used relation connecting 3 J-couplings...
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06-25-2012 04:41 AM
More accurate 1JCH coupling measurement in the presence of 3JHH strong coupling in natural abundance
More accurate 1JCH coupling measurement in the presence of 3JHH strong coupling in natural abundance
Publication year: 2012
Source:Journal of Magnetic Resonance, Volume 215</br>
Bingwu Yu, Hugo van Ingen, Subramanian Vivekanandan, Christoph Rademacher, Scott E. Norris, Darón I. Freedberg</br>
J couplings are essential for measuring RDCs (residual dipolar couplings), now routinely used to deduce molecular structure and dynamics of glycans and proteins. Accurate measurement of 1 J CH is critical for RDCs to reflect the true structure and dynamics in the molecule of...
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03-09-2012 09:16 AM
[NMR paper] Measurement of long-range cross-correlation rates using a combination of single- and
Measurement of long-range cross-correlation rates using a combination of single- and multiple-quantum NMR spectroscopy in one experiment.
Related Articles Measurement of long-range cross-correlation rates using a combination of single- and multiple-quantum NMR spectroscopy in one experiment.
J Am Chem Soc. 2002 Apr 17;124(15):4050-7
Authors: Fruh D, Chiarparin E, Pelupessy P, Bodenhausen G
A method is described to determine long-range cross-correlations between the modulations of an anisotropic chemical shift (e.g., of a C' carbonyl carbon in...
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11-24-2010 08:49 PM
Conformational dependence of 13C shielding and coupling constants for methionine
Abstract Methionine residues fulfill a broad range of roles in protein function related to conformational plasticity, ligand binding, and sensing/mediating the effects of oxidative stress. A high degree of internal mobility, intrinsic detection sensitivity of the methyl group, and low copy number have made methionine labeling a popular approach for NMR investigation of selectively labeled protein macromolecules. However, selective labeling approaches are subject to more limited information content. In order to optimize the information available from such studies, we have performed DFT...
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08-25-2010 03:51 PM
[NMR paper] The impact of direct refinement against three-bond HN-C alpha H coupling constants on
The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR.
Related Articles The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR.
J Magn Reson B. 1994 May;104(1):99-103
Authors: Garrett DS, Kuszewski J, Hancock TJ, Lodi PJ, Vuister GW, Gronenborn AM, Clore GM
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08-22-2010 03:33 AM
[NMR paper] The impact of direct refinement against three-bond HN-C alpha H coupling constants on
The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR.
Related Articles The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR.
J Magn Reson B. 1994 May;104(1):99-103
Authors: Garrett DS, Kuszewski J, Hancock TJ, Lodi PJ, Vuister GW, Gronenborn AM, Clore GM
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[U. of Ottawa NMR Facility Blog] E.COSY and the Relative Signs of Coupling Constants
E.COSY and the Relative Signs of Coupling Constants
Spin-spin coupling constants can have values greater than or less than zero. The absolute sign of the coupling constants cannot be discerned from the simple examination of a 1H NMR spectrum. The E.COSY1 (Exclusive COrrelation SpectroscopY) technique is one method which can be used to determine the relative signs of coupling constants. E.COSY is a phase sensitive COSY variant which produces off-diagonal signals showing only the active coupling (i.e. the coupling directly responsible for the cross-peak) as 2x2 antiphase square tetrads...