Stan NMR blog Let's discuss NMR spectra evaluation and interpretation

		BioNMR > NMR community > News from NMR blogs
[Stan NMR blog] Let's discuss NMR spectra evaluation and interpretation

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-21-2010, 05:42 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Let's discuss NMR spectra evaluation and interpretation

Let's discuss NMR spectra evaluation and interpretation

Invitation to a Mestrelab Research meeting on NMR spectra evaluation at 50th ENC

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR tweet] Just started my report. Infra and Nuclear Magnetic Resonance spectra interpretation na lang. Halfway there. But wait, I'm tired. LOLOLOL Just started my report. Infra and Nuclear Magnetic Resonance spectra interpretation na lang. Halfway there. But wait, I'm tired. LOLOLOL Published by itsaboutNICO (Nico Espinosa) on 2010-12-27T14:02:10Z Source: Twitter	nmrlearner	Twitter NMR	0	12-27-2010 02:07 PM
[NMR paper] Thermodynamic interpretation of protein dynamics from NMR relaxation measurements. Thermodynamic interpretation of protein dynamics from NMR relaxation measurements. Related Articles Thermodynamic interpretation of protein dynamics from NMR relaxation measurements. Protein Pept Lett. 2005 Apr;12(3):235-40 Authors: Spyracopoulos L Protein dynamics and thermodynamics can be characterized through measurements of relaxation rates of side chain (2)H and (13)C, and backbone (15)N nuclei using NMR spectroscopy. The rates reflect protein motions on timescales from picoseconds to milliseconds. Backbone and methyl side chain NMR...	nmrlearner	Journal club	0	11-25-2010 08:21 PM
[NMR paper] New approaches to the dynamic interpretation and prediction of NMR relaxation data fr New approaches to the dynamic interpretation and prediction of NMR relaxation data from proteins. Related Articles New approaches to the dynamic interpretation and prediction of NMR relaxation data from proteins. Curr Opin Struct Biol. 2003 Apr;13(2):175-83 Authors: Brüschweiler R NMR relaxation experiments of isotopically labeled proteins provide a wealth of information on reorientational global and local dynamics on nanosecond and subnanosecond timescales for folded and nonfolded proteins in solution. Recent methodological advances in the...	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR paper] Interpretation of 15N NMR relaxation data of globular proteins using hydrodynamic cal Interpretation of 15N NMR relaxation data of globular proteins using hydrodynamic calculations with HYDRONMR. Related Articles Interpretation of 15N NMR relaxation data of globular proteins using hydrodynamic calculations with HYDRONMR. J Biomol NMR. 2002 Jun;23(2):139-50 Authors: Bernadó P, García de la Torre J, Pons M HYDRONMR is an implementation of state of the art hydrodynamic modeling to calculate the spectral density functions for NH or C(alpha)-H vectors in a rigid protein structure starting from an atomic level representation. Thus...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMR paper] Structural-functional bioinformatics: knowledge-based NMR interpretation. Structural-functional bioinformatics: knowledge-based NMR interpretation. Related Articles Structural-functional bioinformatics: knowledge-based NMR interpretation. Stud Health Technol Inform. 1998;52 Pt 1:365-6 Authors: Kulikowski CA, Zimmerman D, Montelione G, Anderson S This paper describes a knowledge-based approach to a problem of structural-functional bioinformatics, specifically the determination of protein structure through the automated analysis of NMR data. Highly successful results in carrying out sequence-specific assignments of...	nmrlearner	Journal club	0	11-17-2010 11:06 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off