BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 01-23-2015, 03:23 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Hyperpolarized [1,3-(13) C2 ]ethyl acetoacetate is a novel diagnostic metabolic marker of liver cancer

From The DNP-NMR Blog:

Hyperpolarized [1,3-(13) C2 ]ethyl acetoacetate is a novel diagnostic metabolic marker of liver cancer



Jensen, P.R., et al., Hyperpolarized [1,3-(13) C2 ]ethyl acetoacetate is a novel diagnostic metabolic marker of liver cancer. Int J Cancer, 2015. 136(4): p. E117-26.


http://www.ncbi.nlm.nih.gov/pubmed/25156718


An increased prevalence of liver diseases such as hepatitis C and nonalcoholic fatty liver results in an augmented incidence of the most common form of liver cancer, hepatocellular carcinoma (HCC). HCC is most often found in the cirrhotic liver and it can therefore be challenging to rely on anatomical information alone when diagnosing HCC. Valuable information on specific cellular metabolism can be obtained with high sensitivity thanks to an emerging magnetic resonance (MR) technique that uses (13) C labeled hyperpolarized molecules. Our interest was to explore potential new high contrast metabolic markers of HCC using hyperpolarized (13) C-MR. This work led to the identification of a class of substrates, low molecular weight ethyl-esters, which showed high specificity for carboxyl esterases and proved in many cases to possess good properties for signal enhancement. In particular, hyperpolarized [1,3-(13) C2 ]ethyl acetoacetate (EAA) was shown to provide a metabolic fingerprint of HCC. Using this substrate a liver cancer implanted in rats was diagnosed as a consequence of an approximately 4 times higher metabolic substrate-to-product ratio than in the surrounding healthy tissue, (p = 0.009). Unregulated cellular uptake as well as cosubstrate independent enzymatic conversion of EAA, made this substrate highly useful as a hyperpolarized (13) C-MR marker. This could be appreciated by the signal-to-noise (SNR) obtained from EAA, which was comparable to the SNR reported in a literature liver cancer study with state-of-the-art hyperpolarized substrate, [1-(13) C]pyruvate. Also, the contrast-to-noise (CNR) in the EAA based metabolic ratio images was significantly improved compared with the CNR in equivalent images reported using [1-(13) C]pyruvate.


Go to The DNP-NMR Blog for more info.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Postdoc Position: Metabolic Imaging using hyperpolarized 13C MR
From The DNP-NMR Blog: Postdoc Position: Metabolic Imaging using hyperpolarized 13C MR From the Ampere Magnetic Resonance List
nmrlearner News from NMR blogs 0 10-08-2014 05:52 PM
Hyperpolarized 13C dehydroascorbate as an endogenous redox sensor for in vivo metabolic imaging
From The DNP-NMR Blog: Hyperpolarized 13C dehydroascorbate as an endogenous redox sensor for in vivo metabolic imaging Keshari, K.R., et al., Hyperpolarized 13C dehydroascorbate as an endogenous redox sensor for in vivo metabolic imaging. Proc. Nat. Aca. Sci. USA, 2011. 108(46): p. 18606-18611. http://www.pnas.org/content/108/46/18606.abstract
nmrlearner News from NMR blogs 0 07-23-2014 11:25 PM
FTIR blood test for liver cancer
FTIR blood test for liver cancer http://www.spectroscopynow.com/common/images/thumbnails/144d62c377f.jpgFTIR microspectroscopy of human serum can distinguish between healthy livers, cirrhosis of the liver and liver cancer, based on protein structures and lipid levels. More...
nmrlearner News from NMR blogs 0 03-18-2014 09:38 PM
Hyperpolarized butyrate: A metabolic probe of short chain fatty acid metabolism in the heart
From The DNP-NMR Blog: Hyperpolarized butyrate: A metabolic probe of short chain fatty acid metabolism in the heart Ball, D.R., et al., Hyperpolarized butyrate: A metabolic probe of short chain fatty acid metabolism in the heart. Magn Reson Med, 2013: p. n/a-n/a. http://www.ncbi.nlm.nih.gov/pubmed/23798473
nmrlearner News from NMR blogs 0 11-21-2013 01:14 AM
Colon cancer calculated: Metabolic profiling
Colon cancer calculated: Metabolic profiling http://www.spectroscopynow.com/common/images/thumbnails/14077d20717.jpgNuclear magnetic resonance (NMR) spectroscopy can be used to obtain a metabolic fingerprint of cancer of the bowel and so determine how far advanced the disease is, according to UK researchers. Read the rest at Spectroscopynow.com
nmrlearner General 0 08-15-2013 07:22 AM
Hyperpolarized (13) C-labelled anhydrides as DNP precursors of metabolic MRI agents
From the The DNP-NMR Blog: Hyperpolarized (13) C-labelled anhydrides as DNP precursors of metabolic MRI agents Colombo Serra, S., et al., Hyperpolarized 13C-labelled anhydrides as DNP precursors of metabolic MRI agents. Contrast Media & Molecular Imaging, 2012. 7(5): p. 469-477. http://www.ncbi.nlm.nih.gov/pubmed/22821881
nmrlearner News from NMR blogs 0 04-15-2013 08:52 AM
A 1H NMR metabolic profiling to the assessment of protein tyrosine phosphatase 1B role in liver regeneration after partial hepatectomy
A 1H NMR metabolic profiling to the assessment of protein tyrosine phosphatase 1B role in liver regeneration after partial hepatectomy Available online 12 December 2012 Publication year: 2012 Source:Biochimie</br> </br> Protein tyrosine phosphatase 1B (PTP1B) is a negative regulator of the tyrosine kinase growth factor signaling pathway, which is involved in major physiological mechanisms such as liver regeneration. We investigate early hepatic metabolic events produced by partial hepatectomy (PHx) for PTP1B deficient (PTP1B KO) and wild type (WT) mice using proton...
nmrlearner Journal club 0 02-03-2013 10:13 AM
Metabolic signatures of cancer unveiled by NMR spectroscopy of human biofluids
Metabolic signatures of cancer unveiled by NMR spectroscopy of human biofluids April 2012 Publication year: 2012 Source:Progress in Nuclear Magnetic Resonance Spectroscopy, Volume 62</br> </br> </br> </br></br>
nmrlearner Journal club 0 12-15-2012 09:51 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 01:14 AM.


Map