BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 02-08-2018, 04:32 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default How Much Presaturation Power is Needed?

How Much Presaturation Power is Needed?

Measuring 1H NMR spectra of samples in water (or mixtures of H2O and D2O) usually requires some form of solvent suppression of which selective presaturation is the most common method. In this technique, a long low power selective pulse is applied before the high power excitation pulse (or composite pulse). If too little power is used for presaturation, the water signal will not be sufficiently suppressed. If too much power is used, one loses intensity of signals close to the water resonance and foregoes the quantitative nature of the NMR data. The question then arises as to how much power is required for presaturation. The figure below shows the 300 MHz 1H NMR spectra of a plant extract in H2O/D2O measured as a function of presaturation power. The data were acquired on a Bruker AVANCE II console with the Bruker zgcppr pulse sequence using a two second presaturation pulse. The power levels are reported in dB and Hz.
One can see that at higher presaturation powers, one loses intensity for peaks near the water signal. In this case, where the nearest resonance of interest is 52 Hz from the water signal, one can obtain unattenuated signals with a presaturation field strength of 27 Hz. This corresponds to 58 dB on this instrument.



Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
More government support needed for research - Lethbridge Herald
http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcTmf4tkxBcWV42NzQuhRRqmObR-MW1fhS2xmZ92KM30_p7jm2ZyT0vkyi17p9EM9vO8YOKSeuZJ Lethbridge Herald <img alt="" height="1" width="1"> More government support needed for research Lethbridge Herald Kay and his U of T colleagues have made advances in the field of biomolecular nuclear magnetic resonance (NMR) spectroscopy. They've developed ways to visualize protein molecules and how they can form abnormal structures that can lead to disease. More government support needed for research - Lethbridge Herald
nmrlearner Online News 0 10-20-2017 01:48 PM
[Question from NMRWiki Q&A forum] Predicting aquisition time needed depending on sample concentration
Predicting aquisition time needed depending on sample concentration Hi , is there a way of predicting aquisition time needed depending on sample concentration in order to get a decent spectrum for a 2D experiment for example? Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 12-18-2014 11:22 PM
[Question from NMRWiki Q&A forum] 195Pt experiment setup help needed
195Pt experiment setup help needed We just bought a new console (with Topspin 3.2)for our Bruker 400 and noticed that not all experiments that we previously used to run are setup on the new version. For instance, 195Pt experiment is not working. The message that appeared when we tried it was: "Cannot perform getprosol. The following files are not found. Observe pulses for 195Pt. DE and Trim pulses for 195Pt". Could any one help with the step-by-step procedure for setting up this experiment? Perhaps the probe file is not populated with pulses for 195Pt. We would greatly appreciate...
nmrlearner News from other NMR forums 0 03-19-2014 10:43 PM
[U. of Ottawa NMR Facility Blog] Double Presaturation
Double Presaturation Presaturation is a common method of reducing the water signal in the 1H NMR spectra of aqueous samples. Sometimes, a sample may contain more than one undesirable resonance which a user may want to presaturate. In such a case, one must presaturate at multiple frequencies simultaneously. On a two-channel Bruker spectrometer, two signals can be presaturated. This is accomplished by using both Signal Generation Units (SGUs). One of the undesirable signals is put on-resonance and is presaturated with the signal from SGU1 after which the hard pulse is given (also through...
nmrlearner News from NMR blogs 0 03-16-2012 07:24 AM
[U. of Ottawa NMR Facility Blog] Watergate vs Presaturation
Watergate vs Presaturation Biochemists and protein chemists are often interested in observing the NH protons in their samples. Since the NH protons usually undergo slow chemical exchange with water, it is desirable to run the samples in H2O rather than D2O so the NH protons will not exchange with the deuterium in the solvent which would make them invisible in the 1H NMR spectrum. In practice, a mixture of 10% D2O and 90% H2O is used as a solvent so that a deuterium lock can be established and used while running the spectrum. The very high concentration of water compared to the very low...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM
[U. of Ottawa NMR Facility Blog] Presaturation
Presaturation One of the simplest and widely used ways to eliminate a strong water signal is to use presaturation. In this technique, the transmitter is set to the water resonance. a very long (seconds) low power (mW) pulse is given. The excitation profile of this pulse is very narrow due to its length and it saturates the water resonance at the transmitter frequency. A non-selective hard 90° pulse (with a wide excitation profile) is then given to place all remaining spins in the transverse plane for detection. An example of this is shown in the figure below. The top trace is a standard...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM
HELP!!!!! Probe Needed
I need a 300 MHz long bore broadband 1H carbon probe. Does anyone have one laying around they dont need anymore??????
mblume83 NMR Questions and Answers 0 05-08-2007 08:04 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 01:43 PM.


Map