BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 04-26-2017, 02:13 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,733
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default HMBC vs. H2BC

HMBC vs. H2BC

NMR spectroscopy is an indispensable tool for assigning the structure of organic compounds. One very useful method in the NMR toolbox is the Heteronuclear Multiple Bond Correlation (HMBC) experiment. HMBC data are 1H detected and provide a 2D correlation map between 1H and 13C similar to HMQC or HSQC except that the correlations are between protons and carbons separated by two, three and sometimes even four bonds. This long range information is very helpful in elucidating chemical structures, especially those with non-protonated carbons. The problem, however with HMBC data is that the correlations depend only on the magnitude of the long-range 1H-13C coupling constants. Two- or three- bond coupling constants are very similar in magnitude to one another and therefore it is not possible to distinguish between two- and three- bond correlations. Also, since many long range 1H-13C coupling constants (including two-bond coupling constants) are near zero, some correlations may be absent. These problems may make structure elucidation frustrating or impossible. The Heteronuclear 2 Bond Correlation (H2BC) experiment1 provides an HMBC-like correlation map with (almost) exclusively two-bond 1H-13C correlations. Unlike the correlations in the HMBC measurement, which rely exclusively on long range 1H-13C coupling constants, the 1H-13C correlations in the H2BC experiment rely on three-bond 3JH-H coupling between the protons on adjacent carbons. It is a combined HMQC-COSY experiment. The size of the H2BC correlations depends on the magnitude of the 3JH-H coupling constant. Three-bond 1H-13C correlations are possible only if four-bond 4JH-H coupling is significant. One disadvantage to the H2BC experiment is that all correlations between protons and non-protonated carbons are necessarily absent because of the absence of H-H coupling. In general, two-bond 1H-13C correlations that are weak or absent in HMBC spectra are strong in H2BC spectra and three-bond 1H-13C correlations which are strong in HMBC spectra are absent or very weak in H2BC spectra. The techniques are very complimentary. The figure below illustrates the complimentary nature of the two methods for styrene.

The HMBC spectrum in the left panel was scaled up until some of the HMQC artifacts (color coded in blue) were visible. The data show only one 2-bond 1H-13C correlation (color coded in pink). The three-bond 1H-13C correlations are color coded in yellow. In comparison, the H2BC spectrum in the right panel shows exclusively two-bond 1H-13C correlations with the exception of those involving the C1 non-protonated carbon.

1. Nyberg, Duus, Sorensen. J. Am. Chem. Soc. 127, 6154 (2005).


Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMRpipe Yahoo group] Re: processing hmbc
Re: processing hmbc Thanks for this thorough and helpful response from Andrew. Just to amplify one item ... the nmrPipe "FT" function will work with any number of points. It will More...
NMRpipe Yahoo group news News from other NMR forums 0 11-09-2011 06:44 AM
[NMRpipe Yahoo group] Re: processing hmbc
Re: processing hmbc Thank you, Andrew, very much!! I will try this. I am using hmbcetgpnd from Bruker, which is almost the same as I guess. Thank you for very helpful comments More...
NMRpipe Yahoo group news News from other NMR forums 0 11-09-2011 06:44 AM
[NMRpipe Yahoo group] Re: processing hmbc
Re: processing hmbc ... You're welcome. ... yN=yT, etc. for TPPI or any other data dimension acquired in a "real" mode. In modern BioNMR, this is mostly a few magnitude mode More...
NMRpipe Yahoo group news News from other NMR forums 0 11-09-2011 06:44 AM
[NMRpipe Yahoo group] Re: processing hmbc
Re: processing hmbc Hi Anna, Typically, the HMBC acquisition is absolute value mode, so -yMODE and -aq2D should be "Real" and "Magnitude", respectively, and -yT and -yN should be More...
NMRpipe Yahoo group news News from other NMR forums 0 11-09-2011 06:44 AM
[NMRpipe Yahoo group] Re: processing hmbc
Re: processing hmbc Dear Eugene, Thank you for answer! Actually I have figured out how to process HMBC with nmrpipe. It turned out pulse sequence I was using for HMBC is phase More...
NMRpipe Yahoo group news News from other NMR forums 0 11-09-2011 06:44 AM
[NMRpipe Yahoo group] Re: processing hmbc
Re: processing hmbc Dear Andrew, Thank you for answer. I talked to our facility manager and he said that he usually uses phase sensitive detection for HMBC for example More...
NMRpipe Yahoo group news News from other NMR forums 0 11-09-2011 06:44 AM
[Question from NMRWiki Q&A forum] h2bc experiment
h2bc experiment Hello nmr wikier I want to run pulprog h2bcetgpl3 on bruker instrument using adiabiatic shape pulse crp60comp.4 I determine power level sp7 in stdisp for p24 2ms on rga it is warning that d28 is negative how i adjurst this parameter. thanks for answering in advance with best regard feroon
nmrlearner News from other NMR forums 0 09-20-2011 05:16 PM
[Question from NMRWiki Q&A forum] h2bc experiment
h2bc experiment Hello nmr wikierI want to run pulprog h2bcetgpl3 using adiabiatic shape pulse crp60comp.4 now how I determine power level sp7 in stdisp It is giving 90 degree rotation should I double it for 180 degree rotation for p24 2ms is enoughf or can I increase it. thanks for answering in advance with best regard feroon
nmrlearner News from other NMR forums 0 09-13-2011 09:08 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:03 PM.


Map