It is well known that NMR is a very convenient technique for quantification, provided the amount of the material is within the limits of detection in NMR.
When it comes to the actual calculations, this is a very straightforward process that does not require any fancy mathematics. Typically you will select the most convenient signal(s) or multiplet(s) in your spectrum and calculate the integral which can then be mapped to the corresponding concentration units by using a scaling factor that was previously calculated using some internal or external references.
It is however a laborious process. You have to make sure that the signal or multiplet you have selected is isolated enough to avoid contaminations from other signals (solvents, impurities, other compound resonances, etc). Furthermore, you need to know the number of nuclides (i.e. protons) of the integrated signal / multiplet. Again, this is not rocket science but it is particularly labor-intensive. It could take perfectly a few minutes for one single data set.
Now suppose that you have to do this with a library of several hundred or thousands of compounds with their corresponding NMR spectra. Clearly a manual analysis is completely impractical.
There are several approaches out there that can be used to automate this process in some way or another, but to the best of my knowledge they are not optimized to take into account a number of factors that could adversely affect the accuracy and precision of the quantification calculations. Features such as spectral quality variability from sample to sample, different degrees of peak overlap, amongst others, are very important in order to have a robust system.
That is precisely one of the main objectives that we’ve pursued with the development of a new qNMR module for Mnova that we have just released, the ability to process any number of data sets in the most robust way possible.
It has been designed in such a way that it can detect those multiplets in the spectrum that gives the best results whilst discarding those problematic ones (for example, multiplets showing overlapping problems, or having impurities or artifacts). It also calculates the number of nuclides for each of those multiplets, etc.
Bottom line is that this new module is aimed at streamlining qNMR analyses and reporting whilst eliminating tedious and repetitious manual steps.
We believe that it is a useful tool not only in the traditional exploitation of qNMR where the final result is required to the highest level of precision, and the utmost care must be taken in collecting the NMR data, but also in the world of high-throughput NMR where this very careful data acquisition is often not possible. Whilst the first thought may be that qNMR therefore is not possible, we know from collaborative studies that quite reasonable and useful quantitative data can be obtained in this scenario. The error expectation obviously has to be lowered and actual numbers will depend on factors such as the rate of data acquisition, SNR, and impurity levels, but concentration determination to within 5-10% of the actual value is not an unrealistic expectation.
This new module can be tried for free, just go here.
You can also find more information here
Of course, should you have any question or need any further information, please feel free to get in touch with us.
[NMR paper] High-throughput construction method for expression vector of peptides for NMR study s
High-throughput construction method for expression vector of peptides for NMR study suited for isotopic labeling.
Related Articles High-throughput construction method for expression vector of peptides for NMR study suited for isotopic labeling.
Protein Eng Des Sel. 2004 Apr;17(4):305-14
Authors: Tenno T, Goda N, Tateishi Y, Tochio H, Mishima M, Hayashi H, Shirakawa M, Hiroaki H
Fusion protein constructs for labeled peptides were generated with the 114 amino acid thioredoxin (TRX), coupled with the incorporation of a histidine tag for affinity...
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11-24-2010 09:51 PM
[NMR paper] High-throughput 3D structural homology detection via NMR resonance assignment.
High-throughput 3D structural homology detection via NMR resonance assignment.
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Proc IEEE Comput Syst Bioinform Conf. 2004;:278-89
Authors: Langmead CJ, Donald BR
One goal of the structural genomics initiative is the identification of new protein folds. Sequence-based structural homology prediction methods are an important means for prioritizing unknown proteins for structure determination. However, an important challenge remains: two highly...
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11-24-2010 09:25 PM
[NMR paper] High-throughput screening of structural proteomics targets using NMR.
High-throughput screening of structural proteomics targets using NMR.
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FEBS Lett. 2003 Sep 25;552(2-3):207-13
Authors: Galvão-Botton LM, Katsuyama AM, Guzzo CR, Almeida FC, Farah CS, Valente AP
We applied a high-throughput strategy for the screening of targets for structural proteomics of Xanthomonas axonopodis pv citri. This strategy is based on the rapid (1)H-(15)N HSQC NMR analysis of bacterial lysates containing selectively (15)N-labelled heterologous...
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11-24-2010 09:16 PM
[NMR paper] Integration of NMR and high-throughput screening.
Integration of NMR and high-throughput screening.
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Comb Chem High Throughput Screen. 2002 Dec;5(8):613-21
Authors: Hajduk PJ, Burns DJ
NMR-based screening has become a powerful method for the identification and analysis of low-molecular weight organic compounds that bind to protein targets and can be utilized in drug discovery programs. In particular, heteronuclear NMR-based screening can yield information about both the affinity and binding location of potential lead compounds....
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11-24-2010 08:58 PM
[NMR paper] NMR analysis of in vitro-synthesized proteins without purification: a high-throughput
NMR analysis of in vitro-synthesized proteins without purification: a high-throughput approach.
Related Articles NMR analysis of in vitro-synthesized proteins without purification: a high-throughput approach.
FEBS Lett. 2002 Jul 31;524(1-3):159-62
Authors: Guignard L, Ozawa K, Pursglove SE, Otting G, Dixon NE
A cell-free protein expression system was established that provides protein samples of adequate concentration and purity for direct NMR analysis. The Escherichia coli peptidyl-prolyl cis-trans isomerase PpiB was expressed in this system...
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11-24-2010 08:58 PM
[NMR paper] An approach for high-throughput structure determination of proteins by NMR spectrosco
An approach for high-throughput structure determination of proteins by NMR spectroscopy.
Related Articles An approach for high-throughput structure determination of proteins by NMR spectroscopy.
J Biomol NMR. 2000 Nov;18(3):229-38
Authors: Medek A, Olejniczak ET, Meadows RP, Fesik SW
An approach is described for rapidly determining protein structures by NMR that utilizes proteins containing 13C-methyl labeled Val, Leu, and Ile (delta1) and protonated Phe and Tyr in a deuterated background. Using this strategy, the key NOEs that define the...
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11-19-2010 08:29 PM
NMR in a crystallography-based high-throughput protein structure-determination enviro
NMR in a crystallography-based high-throughput protein structure-determination environment.
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Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1365-6
Authors: Wüthrich K
An introduction is provided to three papers which compare corresponding protein crystal and NMR solution structures determined by the Joint Center for Structural Genomics (JCSG). Special mention is made of the JCSG strategy for combined use of the two...
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10-16-2010 03:56 PM
[NMR analysis blog] Basis on qNMR: Intramolecular vs Mixtures qNMR
Basis on qNMR: Intramolecular vs Mixtures qNMR
A bit of historical background
NMR has won its reputation as a powerful tool for structure determination of organic molecules. In addition to the information provided by chemical shifts and coupling constants, the quantitative relationships existing between the peaks (or groups of peaks - multiplets) arising from the various nuclides in the sample has proven pivotal for the assignment and interpretation of NMR spectra.
Despite the fact that the concept of quantitative NMR (qNMR) has been coupled to NMR since the early 1950, shortly...