Dynamic nuclear polarization (DNP) experiments on samples with several types of magnetic nuclei sometimes exhibit "cross-talk" between the nuclei, such as different nuclei having DNP spectra with similar shapes and enhancements. In this work we demonstrate that while at 20 K the DNP spectra of (1)H and (2)H nuclei, in a sample composed of 50% v/v (1)H2O/DMSO-d6 and containing 40 mM TEMPOL, are different and can be analyzed using the indirect cross effect (iCE) model, at 6 K the DNP spectra of both (1)H and (2)H nuclei become identical. In addition we experimentally demonstrate that there exists an efficient polarization exchange between the two nuclear pools at this temperature. Both of these results are hallmark predictions of the thermal mixing (TM) formalism. However, the origin of these observations cannot, in our case, be explained using the standard TM formalism, as in our sample the electron reservoir cannot be described by a single non-Zeeman spin temperature, which is a prerequisite of TM. This conclusion follows from the analysis of the electron electron double resonance (ELDOR) experiments on our sample and is similar to the previously published results. Consequently, another mechanism must be used in order to explain these "cross-talk" effects. The heteronuclear cross effect (hnCE) DNP mechanism, previously introduced based on the simulations of the spin evolution in small model systems, results in "cross-talk" effects between two types of nuclei that are similar to the experimental ones seen in this work. In particular we show that the hnCE mechanism exhibits polarization transfer between the nuclei and that there exists a clear relationship between the steady state polarizations of the two types of nuclei which may, in the future, be correlated with the phenomenon observed in the two types of bulk nuclear signals in samples during DNP experiments. It is suggested that the hnCE electrons are a possible source for the process that equalizes the bulk enhancements of the (1)H and (2)H nuclei and are responsible for the observed cross-talk effects.
Carbon and proton Overhauser DNP from MD simulations and ab initio calculations: TEMPOL in acetone
From The DNP-NMR Blog:
Carbon and proton Overhauser DNP from MD simulations and ab initio calculations: TEMPOL in acetone
Kucuk, S.E., T. Biktagirov, and D. Sezer, Carbon and proton Overhauser DNP from MD simulations and ab initio calculations: TEMPOL in acetone. Phys Chem Chem Phys, 2015. 17(38): p. 24874-84.
http://www.ncbi.nlm.nih.gov/pubmed/26343351
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01-16-2016 04:41 AM
Molecular simulations for dynamic nuclear polarization in liquids: a case study of TEMPOL in acetone and DMSO
From The DNP-NMR Blog:
Molecular simulations for dynamic nuclear polarization in liquids: a case study of TEMPOL in acetone and DMSO
Kucuk, S.E., et al., Molecular simulations for dynamic nuclear polarization in liquids: a case study of TEMPOL in acetone and DMSO. Phys Chem Chem Phys, 2015. 17(9): p. 6618-28.
http://www.ncbi.nlm.nih.gov/pubmed/25665728
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05-11-2015 09:06 PM
[NMR paper] Low-power polarization transfer between deuterons and spin-1/2 nuclei using adiabatic (RESPIRATION)CP in solid-state NMR.
Low-power polarization transfer between deuterons and spin-1/2 nuclei using adiabatic (RESPIRATION)CP in solid-state NMR.
Related Articles Low-power polarization transfer between deuterons and spin-1/2 nuclei using adiabatic (RESPIRATION)CP in solid-state NMR.
Phys Chem Chem Phys. 2014 Jan 13;
Authors: Jain SK, Nielsen AB, Hiller M, Handel L, Ernst M, Oschkinat H, Akbey U, Nielsen NC
Abstract
Establishing high-resolution structures of biological macromolecules in heterogeneous environments by MAS solid-state NMR is an important...
TEMPOL as a polarizing agent for dynamic nuclear polarization of aqueous solutions
From The DNP-NMR Blog:
TEMPOL as a polarizing agent for dynamic nuclear polarization of aqueous solutions
Gafurov, M., TEMPOL as a polarizing agent for dynamic nuclear polarization of aqueous solutions. Magn. Reson. Solids., 2013. 15: p. 13103.
http://mrsej.ksu.ru/contents.html#13103
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05-03-2013 02:26 PM
[KPWU blog] add protons (hydrogens) to structure
add protons (hydrogens) to structure
A list of online servers or programs as I know which can add hydrogens on the structures (most likely determined by X-ray crystallography). WHATIF server (http://swift.cmbi.ru.nl/servers/html/index.html) –> check “Hydrogen (bonds)” in the left frame Molprobity server (http://molprobity.biochem.duke.edu/) –> after uploading a PDB file, you will see “add hydrogen” in the online interface. HAAD: (a computer http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=662&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
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02-25-2012 12:16 AM
[NMR paper] NMR studies of protein hydration and TEMPOL accessibility.
NMR studies of protein hydration and TEMPOL accessibility.
Related Articles NMR studies of protein hydration and TEMPOL accessibility.
J Mol Biol. 2003 Sep 12;332(2):437-47
Authors: Niccolai N, Spiga O, Bernini A, Scarselli M, Ciutti A, Fiaschi I, Chiellini S, Molinari H, Temussi PA
Understanding the mechanisms of the interaction between a protein surface and its outer molecular environment is of primary relevance for the rational design of new drugs and engineered proteins. Protein surface accessibility is emerging as a new dimension of...
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11-24-2010 09:16 PM
NMR of Naphthalene: why are the alpha-protons more downfield than the beta- protons?
Hi, can you please help me explain why the alpha-protons of naphthalene are further downfield? I know that the protons at the alpha position must be more deshielded, but I don't know how to explain why they have less electron density compared to the beta protons. Does this have to do with the number of double bonds that can be drawn in different resonance structures? Thanks for your help!Thanks so much!