Recently I requested a copy of HADDOCK from Dr. Alexandre Bonvin in order to generate some docked dimers for my colleagues. They are working on some dimeric proteins but they have no idea how to obtain the dimeric conformation from homologous known structures. I spent few days reading the threads in the HADDOCK discussion group [...]
Three-days HADDOCK workshop in Vilnius
LINK
Description
HADDOCK is an information-driven docking program developed at Utrecht University, which is widely used in the structural biology community and has demonstrated a strong performance in the blind docking competition CAPRI.
The workshop will be given by Prof. Alexandre Bonvin with a number of his group members. It will consist of lectures in the morning and hands-on sessions on computers in the afternoon.
Sign ups are limited to 20 people. For these, experience with Linux is a requisite. The workshop will cover various aspects of the modelling of biomolecular...
markber
Conferences
0
02-26-2012 10:22 PM
[KPWU blog] Things must be changed before Protein-RNA docking using Haddock
Things must be changed before Protein-RNA docking using Haddock
Just a note for RNA-protein docking using Haddock 2.1 System: Mac OS 10.6.8, CNS 1.3, Haddock 2.1 1. RNA (or DNA) nomenclature in CNS is not same as the names in PDB. e.g. ACU in PDB = ADE CYT URI in CNS The “nucleic acid builder” developed in David *Case group can generate template structure http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=655&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
nmrlearner
News from NMR blogs
0
02-23-2012 07:38 AM
[CNS Yahoo group] Quick-and-dirty searches of both PDB and EMDB at PDBe
Quick-and-dirty searches of both PDB and EMDB at PDBe
Hi all, As part of its recent winter update, the Protein Data Bank in Europe (PDBe; http://pdbe.org/) has improved its facility that allows for tandem searches
More...
nmrlearner
News from other NMR forums
0
04-01-2011 09:31 PM
[KPWU blog] Install Xplor-NIH 2.26 on new iMac (10.6)
Install Xplor-NIH 2.26 on new iMac (10.6)
A short note for installation of xplor-nih 2.26 on iMac. Few months ago, I downloaded XPLOR-NIH 2.26 for Mac OS and installed it on my new iMac (core i3, 3.06 GHz). The default configuration script does not include “Intel Core i3″ *in the processor list (at xplor-nih-xxx/arch/getDarwinCPU). The solution to make the configuration is to http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=234&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
nmrlearner
News from NMR blogs
0
12-25-2010 04:09 AM
[BMNRC community] HADDOCK Software web portal
HADDOCK Software web portal
http://haddock.chem.uu.nl/index.html
Go to BMNRC community to find more info about this topic.
HADDOCK on iMac and a quick benchmark
Linear Mode
