Stan NMR blog Fundamental MR constants

		BioNMR > NMR community > News from NMR blogs
[Stan NMR blog] Fundamental MR constants

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-21-2010, 05:42 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Fundamental MR constants

Fundamental MR constants

A selection of five constants considered fundamental in MR physics and engineering

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] NMR methods for the determination of protein-ligand dissociation constants. NMR methods for the determination of protein-ligand dissociation constants. Related Articles NMR methods for the determination of protein-ligand dissociation constants. Curr Top Med Chem. 2003;3(1):39-53 Authors: Fielding L This article is a review with 83 references of the application of NMR to the measurement of the dissociation constants of protein-ligand complexes. After briefly discussing some general concepts of molecular stability, the text turns to consider which NMR parameters are reporters of complex formation. The available data...	nmrlearner	Journal club	0	11-24-2010 09:01 PM
Conformational dependence of 13C shielding and coupling constants for methionine Abstract Methionine residues fulfill a broad range of roles in protein function related to conformational plasticity, ligand binding, and sensing/mediating the effects of oxidative stress. A high degree of internal mobility, intrinsic detection sensitivity of the methyl group, and low copy number have made methionine labeling a popular approach for NMR investigation of selectively labeled protein macromolecules. However, selective labeling approaches are subject to more limited information content. In order to optimize the information available from such studies, we have performed DFT...	nmrlearner	Journal club	0	08-25-2010 03:51 PM
[NMR paper] Individual ionization constants of all the carboxyl groups in ribonuclease HI from Es Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR. Related Articles Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR. Biochemistry. 1994 May 3;33(17):5275-84 Authors: Oda Y, Yamazaki T, Nagayama K, Kanaya S, Kuroda Y, Nakamura H All of the individual carboxyl groups (the side-chain carboxyl groups of Asp and Glu, and the C-terminal alpha-carboxyl group) in Escherichia coli ribonuclease HI, which is an enzyme...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] Individual ionization constants of all the carboxyl groups in ribonuclease HI from Es Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR. Related Articles Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR. Biochemistry. 1994 May 3;33(17):5275-84 Authors: Oda Y, Yamazaki T, Nagayama K, Kanaya S, Kuroda Y, Nakamura H All of the individual carboxyl groups (the side-chain carboxyl groups of Asp and Glu, and the C-terminal alpha-carboxyl group) in Escherichia coli ribonuclease HI, which is an enzyme...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[U. of Ottawa NMR Facility Blog] E.COSY and the Relative Signs of Coupling Constants E.COSY and the Relative Signs of Coupling Constants Spin-spin coupling constants can have values greater than or less than zero. The absolute sign of the coupling constants cannot be discerned from the simple examination of a 1H NMR spectrum. The E.COSY1 (Exclusive COrrelation SpectroscopY) technique is one method which can be used to determine the relative signs of coupling constants. E.COSY is a phase sensitive COSY variant which produces off-diagonal signals showing only the active coupling (i.e. the coupling directly responsible for the cross-peak) as 2x2 antiphase square tetrads...	nmrlearner	News from NMR blogs	0	08-21-2010 08:15 PM
[Stan NMR blog] Constants of physics and mathematics Constants of physics and mathematics Latest CODATA values with SI dimensions. More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM
[Stan NMR blog] References on Constants of Physics and Mathematics References on Constants of Physics and Mathematics Stan's extensive table of fundamental physics and math constants has been updated. More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off