BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-14-2017, 03:27 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default EPR Spectroscopy of Nitroxide Spin Probes #EPR #DNPNMR

From The DNP-NMR Blog:

EPR Spectroscopy of Nitroxide Spin Probes #EPR #DNPNMR

p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}
Nitroxide spin labels are extensively used in EPR for distance measurements and many polarizing agents are based on nitroxides. More recently they are also used in Overhauser DNP measurements (ODNP) to study surface hydration dynamics of larger (membrane) proteins. Although the article is already a bit older, it is a nice review of spin labels and their use in EPR spectroscopy.




Bordignon, E., EPR Spectroscopy of Nitroxide Spin Probes, in eMagRes. 2017, John Wiley & Sons, Ltd. p. 235-254.


http://dx.doi.org/10.1002/9780470034590.emrstm1513


In this article, we will introduce the main chemical and spectroscopic properties of nitroxides. These paramagnetic non-endogenous probes have been widely used in EPR spectroscopy in the last decade due to their high stability and simple spectral fingerprint, which provides a wealth of qualitative and quantitative information about their microscopic environment under almost unrestricted experimental conditions. Nitroxides can be covalently or noncovalently introduced into a variety of different materials to monitor viscosity, local dynamics, pH, polarity, H-bond networks, transition temperatures, and distances toward other nitroxide probes. In general, these small probes minimally perturb the system under investigation, and being the unique paramagnetic centers in an otherwise diamagnetic sample, they provide unequivocal information. Here we will focus on their exquisite sensitivity to report molecular motions within defined ‘EPR timescales’ and spin-spin interactions via changes in their spectral lineshape. Additionally, we will discuss some methods to monitor polarity and formation of H-bonds in their microenvironment.
p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}

Go to The DNP-NMR Blog for more info.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Tailored Polarizing Hybrid Solids with Nitroxide Radicals Localized in Mesostructured Silica Walls #DNPNMR
From The DNP-NMR Blog: Tailored Polarizing Hybrid Solids with Nitroxide Radicals Localized in Mesostructured Silica Walls #DNPNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Silverio, D.L., et al., Tailored Polarizing Hybrid Solids with Nitroxide Radicals Localized in Mesostructured Silica Walls. Helvetica Chimica Acta, 2017: p. n/a-n/a. http://dx.doi.org/10.1002/hlca.201700101
nmrlearner News from NMR blogs 0 05-05-2017 09:46 PM
Nuclear spin-lattice relaxation in nitroxide spin-label EPR
From The DNP-NMR Blog: Nuclear spin-lattice relaxation in nitroxide spin-label EPR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Marsh, D., Nuclear spin-lattice relaxation in nitroxide spin-label EPR. J Magn Reson, 2016. 272: p. 166-171. https://www.ncbi.nlm.nih.gov/pubmed/27712989
nmrlearner News from NMR blogs 0 12-02-2016 07:56 PM
Cross relaxation in nitroxide spin labels
From The DNP-NMR Blog: Cross relaxation in nitroxide spin labels p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Marsh, D., Cross relaxation in nitroxide spin labels. J Magn Reson, 2016. 272: p. 172-180. https://www.ncbi.nlm.nih.gov/pubmed/27717659
nmrlearner News from NMR blogs 0 11-25-2016 08:18 PM
A high saturation factor in Overhauser DNP with nitroxide derivatives: the role of (14)N nuclear spin relaxation
From The DNP-NMR Blog: A high saturation factor in Overhauser DNP with nitroxide derivatives: the role of (14)N nuclear spin relaxation Enkin N, Liu G, Gimenez-Lopez Mdel C, Porfyrakis K, Tkach I, Bennati M. A high saturation factor in Overhauser DNP with nitroxide derivatives: the role of (14)N nuclear spin relaxation. Phys Chem Chem Phys. 2015;17(17):11144-9. http://www.ncbi.nlm.nih.gov/pubmed/25855020
nmrlearner News from NMR blogs 0 05-21-2015 03:46 AM
The Spatial Effect of Protein Deuteration on Nitroxide Spin-label Relaxation: Implications for EPR Distance Measurement
The Spatial Effect of Protein Deuteration on Nitroxide Spin-label Relaxation: Implications for EPR Distance Measurement Publication date: Available online 28 September 2014 Source:Journal of Magnetic Resonance</br> Author(s): Hassane. El Mkami , Richard Ward , Andrew Bowman , Tom Owen-Hughes , David G. Norman</br> Pulsed electron-electron double resonance (PELDOR) coupled with site-directed spin labeling is a powerful technique for the elucidation of protein or nucleic acid, macromolecular structure and interactions. The intrinsic high sensitivity of electron...
nmrlearner Journal club 0 09-28-2014 08:03 PM
Structural factors controlling the spin-spin exchange coupling: EPR spectroscopic studies of highly asymmetric trityl-nitroxide biradicals
From The DNP-NMR Blog: Structural factors controlling the spin-spin exchange coupling: EPR spectroscopic studies of highly asymmetric trityl-nitroxide biradicals Liu, Y., et al., Structural factors controlling the spin-spin exchange coupling: EPR spectroscopic studies of highly asymmetric trityl-nitroxide biradicals. J Am Chem Soc, 2013. 135(6): p. 2350-6. http://www.ncbi.nlm.nih.gov/pubmed/23320522
nmrlearner News from NMR blogs 0 03-03-2014 04:55 PM
Conformational dynamics and distribution of nitroxide spin labels
Conformational dynamics and distribution of nitroxide spin labels Publication date: Available online 18 April 2013 Source:Progress in Nuclear Magnetic Resonance Spectroscopy</br> Author(s): Gunnar Jeschke</br> Long-range distance measurements based on paramagnetic relaxation enhancement (PRE) in NMR, quantification of surface water dynamics near biomacromolecules by Overhauser dynamic nuclear polarization (DNP) and sensitivity enhancement by solid-state DNP all depend on introducing paramagnetic species into an otherwise diamagnetic NMR sample. The species can be...
nmrlearner Journal club 0 04-18-2013 10:12 PM
[NMR paper] An NMR investigation of the conformational effect of nitroxide spin labels on Ala-ric
An NMR investigation of the conformational effect of nitroxide spin labels on Ala-rich helical peptides. Related Articles An NMR investigation of the conformational effect of nitroxide spin labels on Ala-rich helical peptides. J Magn Reson. 1998 Apr;131(2):248-53 Authors: Bolin KA, Hanson P, Wright SJ, Millhauser GL Nitroxide spin labels, in conjunction with electron spin resonance (ESR) experiments, are extensively employed to probe the structure and dynamics of biomolecules. One of the most ubiquitous spin labeling reagents is the...
nmrlearner Journal club 0 11-17-2010 11:06 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 08:31 AM.


Map