BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 03-16-2012, 07:24 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Double Presaturation

Double Presaturation

Presaturation is a common method of reducing the water signal in the 1H NMR spectra of aqueous samples. Sometimes, a sample may contain more than one undesirable resonance which a user may want to presaturate. In such a case, one must presaturate at multiple frequencies simultaneously. On a two-channel Bruker spectrometer, two signals can be presaturated. This is accomplished by using both Signal Generation Units (SGUs). One of the undesirable signals is put on-resonance and is presaturated with the signal from SGU1 after which the hard pulse is given (also through SGU1). The second undesirable resonance is presaturated using SGU2. The configuration is as follows:If one has a three-channel system, one can presaturate three resonances using three SGUs. The figure below shows an example of double presaturation on a two-channel system. The sample consisted of phenylalanine dissolved in D2O contaminated with methanol. The one-pulse spectrum in the bottom left panel shows the intense HDO and methanol signals. The double presaturation spectrum in the top left panel is on the same vertical scale as the one on the bottom left. One can see that both solvent signals have been almost completely eliminated. The spectra on the right-hand side are the same data as on the left except the vertical scale has been increased by a factor of 100. You can try this on your Bruker spectrometer using the pulse program "lc1prf2".



Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Real-Time NMR Studies of Electrochemical Double-Layer Capacitors
Real-Time NMR Studies of Electrochemical Double-Layer Capacitors Hao Wang, Thomas K.-J. Ko?ster, Nicole M. Trease, Julie Se?galini, Pierre-Louis Taberna, Patrice Simon, Yury Gogotsi and Clare P. Grey http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja2072115/aop/images/medium/ja-2011-072115_0006.gif Journal of the American Chemical Society DOI: 10.1021/ja2072115 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/-UeWTD49pVw
nmrlearner Journal club 0 11-12-2011 01:40 AM
[U. of Ottawa NMR Facility Blog] Heteronuclear Double Quantum Filters
Heteronuclear Double Quantum Filters Double quantum filters are used to filter out single quantum magnetization and allow the passage of double quantum magnetization. In the proton observe heteronuclear case, the double quantum filter (like the BIRD filter) allows the selective observation of the weak satellite signals from protons coupled to dilute spin I = 1/2 X nuclei (e.g. X = 13C, 15N, 29Si ....) but rejects the strong singlets from the uncoupled protons in the vicinity of 12C, self decoupled 14N, and 28Si . The figure below illustrates the heteronuclear double quantum filter...
nmrlearner News from NMR blogs 0 04-22-2011 03:01 AM
[CNS Yahoo group] Double protonated His side chains have charge +1 independent of pH
Double protonated His side chains have charge +1 independent of pH Hi all, I am using ccpn/aria/cns combination for my structural work. I discovered a probably bad fact during the aria/cns structure calculation. In the ccpn More...
nmrlearner News from other NMR forums 0 01-20-2011 03:28 AM
Investigation of the dynamical properties of water in elastin by deuterium Double Qua
Investigation of the dynamical properties of water in elastin by deuterium Double Quantum Filtered NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Investigation of the dynamical properties of water in elastin by deuterium Double Quantum Filtered NMR. J Magn Reson. 2010 Jul;205(1):86-92 Authors: Sun C, Boutis GS The anisotropic motion of tightly bound waters of hydration in bovine nuchal ligament elastin has been studied by deuterium Double Quantum Filtered (DQF) NMR....
nmrlearner Journal club 0 09-22-2010 05:27 AM
[NMR paper] Double and triple resonance NMR methods for protein assignment.
Double and triple resonance NMR methods for protein assignment. Related Articles Double and triple resonance NMR methods for protein assignment. Methods Mol Biol. 1997;60:29-52 Authors: Whitehead B, Craven CJ, Waltho JP
nmrlearner Journal club 0 08-22-2010 03:31 PM
[NMR paper] Double and triple resonance NMR methods for protein assignment.
Double and triple resonance NMR methods for protein assignment. Related Articles Double and triple resonance NMR methods for protein assignment. Methods Mol Biol. 1997;60:29-52 Authors: Whitehead B, Craven CJ, Waltho JP
nmrlearner Journal club 0 08-22-2010 03:03 PM
[U. of Ottawa NMR Facility Blog] Watergate vs Presaturation
Watergate vs Presaturation Biochemists and protein chemists are often interested in observing the NH protons in their samples. Since the NH protons usually undergo slow chemical exchange with water, it is desirable to run the samples in H2O rather than D2O so the NH protons will not exchange with the deuterium in the solvent which would make them invisible in the 1H NMR spectrum. In practice, a mixture of 10% D2O and 90% H2O is used as a solvent so that a deuterium lock can be established and used while running the spectrum. The very high concentration of water compared to the very low...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM
[U. of Ottawa NMR Facility Blog] Presaturation
Presaturation One of the simplest and widely used ways to eliminate a strong water signal is to use presaturation. In this technique, the transmitter is set to the water resonance. a very long (seconds) low power (mW) pulse is given. The excitation profile of this pulse is very narrow due to its length and it saturates the water resonance at the transmitter frequency. A non-selective hard 90° pulse (with a wide excitation profile) is then given to place all remaining spins in the transverse plane for detection. An example of this is shown in the figure below. The top trace is a standard...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 11:22 AM.


Map