BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-11-2020, 06:01 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Creating a clinical platform for carbon-13 studies using the sodium-23 and proton resonances #DNPNMR

From The DNP-NMR Blog:

Creating a clinical platform for carbon-13 studies using the sodium-23 and proton resonances #DNPNMR

Grist, James T., Esben S.S. Hansen, Juan D. Sánchez-Heredia, Mary A. McLean, Rasmus Tougaard, Frank Riemer, Rolf F. Schulte, et al. “Creating a Clinical Platform for Carbon-13 Studies Using the Sodium-23 and Proton Resonances.” Magnetic Resonance in Medicine, March 13, 2020, mrm.28238.


https://doi.org/10.1002/mrm.28238.


Purpose: Calibration of hyperpolarized 13C-MRI is limited by the low signal from endogenous carbon-containing molecules and consequently requires 13C-enriched external phantoms. This study investigated the feasibility of using either 23Na-MRI or 1H-MRI to calibrate the 13C excitation.


Methods: Commercial 13C-coils were used to estimate the transmit gain and center frequency for 13C and 23Na resonances. Simulations of the transmit B1 profile of a Helmholtz loop were performed. Noise correlation was measured for both nuclei. A retrospective analysis of human data assessing the use of the 1H resonance to predict [1-13C]pyruvate center frequency was also performed. In vivo experiments were undertaken in the lower limbs of 6 pigs following injection of hyperpolarized 13C-pyruvate.


Results: The difference in center frequencies and transmit gain between tissue 23Na and [1-13C]pyruvate was reproducible, with a mean scale factor of 1.05179 ± 0.00001 and 10.4 ± 0.2 dB, respectively. Utilizing the 1H water peak, it was possible to retrospectively predict the 13C-pyruvate center frequency with a standard deviation of only 11 Hz sufficient for spectral–spatial excitation-based studies.


Conclusion: We demonstrate the feasibility of using the 23Na and 1H resonances to calibrate the 13C transmit B1 using commercially available 13C-coils. The method provides a simple approach for in vivo calibration and could improve clinical workflow.


Go to The DNP-NMR Blog for more info.
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Creating a clinical platform for carbon-13 studies using the sodium-23 and proton resonances #DNPNMR
From The DNP-NMR Blog: Creating a clinical platform for carbon-13 studies using the sodium-23 and proton resonances #DNPNMR Grist, James T., Esben S.S. Hansen, Juan D. Sánchez-Heredia, Mary A. McLean, Rasmus Tougaard, Frank Riemer, Rolf F. Schulte, et al. “Creating a Clinical Platform for Carbon-13 Studies Using the Sodium-23 and Proton Resonances.” Magnetic Resonance in Medicine, March 13, 2020, mrm.28238. https://doi.org/10.1002/mrm.28238.
nmrlearner News from NMR blogs 0 06-03-2020 11:09 PM
Hyperpolarized 13C MRI: Path to Clinical Translation in Oncology #DNPNMR
From The DNP-NMR Blog: Hyperpolarized 13C MRI: Path to Clinical Translation in Oncology #DNPNMR Kurhanewicz, John, Daniel B. Vigneron, Jan Henrik Ardenkjaer-Larsen, James A. Bankson, Kevin Brindle, Charles H. Cunningham, Ferdia A. Gallagher, et al. “Hyperpolarized 13C MRI: Path to Clinical Translation in Oncology.” Neoplasia 21, no. 1 (January 2019): 1–16. https://doi.org/10.1016/j.neo.2018.09.006.
nmrlearner News from NMR blogs 0 02-29-2020 09:52 PM
Proton and Carbon-13 Dynamic Nuclear Polarization of Methylated ?-Cyclodextrins #DNPNMR
From The DNP-NMR Blog: Proton and Carbon-13 Dynamic Nuclear Polarization of Methylated ?-Cyclodextrins #DNPNMR Caracciolo, F., et al., Proton and Carbon-13 Dynamic Nuclear Polarization of Methylated ?-Cyclodextrins. The Journal of Physical Chemistry B, 2018. 122(6): p. 1836-1845. https://doi.org/10.1021/acs.jpcb.7b11950
nmrlearner News from NMR blogs 0 03-02-2018 03:20 PM
Sensitivity-enhanced detection of non-labile proton and carbon NMR spectra on water resonances #DNPNMR
From The DNP-NMR Blog: Sensitivity-enhanced detection of non-labile proton and carbon NMR spectra on water resonances #DNPNMR Novakovic, M., et al., Sensitivity-enhanced detection of non-labile proton and carbon NMR spectra on water resonances. Phys. Chem. Chem. Phys., 2017. 20(1): p. 56-62. https://www.ncbi.nlm.nih.gov/pubmed/29171604
nmrlearner News from NMR blogs 0 02-19-2018 08:46 PM
[NMR paper] Characterization of Sodium Mobility and Binding by (23) Na NMR Spectroscopy in a Model Lipoproteic Emulsion Gel for Sodium Reduction.
Characterization of Sodium Mobility and Binding by (23) Na NMR Spectroscopy in a Model Lipoproteic Emulsion Gel for Sodium Reduction. Related Articles Characterization of Sodium Mobility and Binding by (23) Na NMR Spectroscopy in a Model Lipoproteic Emulsion Gel for Sodium Reduction. J Food Sci. 2017 May 27;: Authors: Okada KS, Lee Y Abstract The effects of formulation and processing parameters on sodium availability in a model lipid/protein-based emulsion gel were studied for purposes of sodium reduction. Heat-set model gels...
nmrlearner Journal club 0 05-31-2017 09:18 PM
Phenylazide Hybrid-Silica - Polarization Platform for Dynamic Nuclear Polarization at Cryogenic Temperatures #DNPNMR
From The DNP-NMR Blog: Phenylazide Hybrid-Silica - Polarization Platform for Dynamic Nuclear Polarization at Cryogenic Temperatures #DNPNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Grüning, W.R., et al., Phenylazide Hybrid-Silica - Polarization Platform for Dynamic Nuclear Polarization at Cryogenic Temperatures. Helvetica Chimica Acta, 2016: p. n/a-n/a. http://dx.doi.org/10.1002/hlca.201600122
nmrlearner News from NMR blogs 0 11-19-2016 08:35 PM
[NMR images] Proton and carbon NMR spectroscopy
http://www.southampton.ac.uk/nmr/images/capabilities_images/strych_hmbc_215.jpg 3/06/2014 10:43:59 AM GMT Proton and carbon NMR spectroscopy More...
nmrlearner NMR pictures 0 06-03-2014 10:43 AM
[NMR images] Proton and carbon NMR spectroscopy
http://www.southampton.ac.uk/nmr/images/capabilities_images/strych_hmbc_215.jpg www.southampton.ac.uk 14/02/2014 5:48:03 PM GMT Proton and carbon NMR spectroscopy More...
nmrlearner NMR pictures 0 02-14-2014 05:47 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:30 PM.


Map