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[NMR900 blog] CREATE program in Bionanomachines

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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11-02-2011, 02:14 AM

nmrlearner

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CREATE program in Bionanomachines

CREATE program in Bionanomachines

Graduate and Undergraduate Research Opportunities in Bionanotechnology

The new NSERC-sponsored CREATE Training Program in Bionanomachines (CTPB) offers summer research stipends to undergraduates and 2-year stipends to graduate students in 22 laboratories in Montreal, Québec City, Calgary and Saskatoon. Bionanomachines is a young and developing field at the intersection of structural biology, supramolecular chemistry and biophysics that seeks to understand how biological machines function at the molecular level, and to harness their power for applications in health, chemistry and physics. For more information visit http://bionano.ca/en or contact the CTPB Coordinator at (bionano.med "at" mcgill.ca).

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