Conceptual and instrumental progress in dissolution DNP #DNPNMR

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Conceptual and instrumental progress in dissolution DNP #DNPNMR

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

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NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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05-23-2016, 10:51 PM

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Conceptual and instrumental progress in dissolution DNP #DNPNMR

From The DNP-NMR Blog:

Conceptual and instrumental progress in dissolution DNP #DNPNMR

Jahnig, F., G. Kwiatkowski, and M. Ernst, Conceptual and instrumental progress in dissolution DNP. J Magn Reson, 2016. 264: p. 22-9.

http://www.ncbi.nlm.nih.gov/pubmed/26920827

We discuss conceptual and instrumental progress in dissolution DNP since its introduction in 2003. In our view there are three critical steps in the dissolution DNP process: (i) The achievable polarization level in a sample. (ii) The time required to build up the polarization. (iii) The transfer of the sample to the measurement system with minimum loss of polarization. In this review we describe in detail these steps and the different methodological and instrumental implementations, which have been proposed to optimize them.

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