Stan NMR blog On Canonical Gray Cycles

		BioNMR > NMR community > News from NMR blogs
[Stan NMR blog] On Canonical Gray Cycles

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-02-2014, 12:08 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

On Canonical Gray Cycles

On Canonical Gray Cycles

Counting canonical cycles of Gray codes for various cycle lengths.

Source: Stan blog library

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR images] The protein NMR structure of HsTx1, a scorpion toxin with a canonical ... http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Hstx1_1quz.png/250px-Hstx1_1quz.png en.wikipedia.org 19/07/2013 7:44:28 AM GMT The protein NMR structure of HsTx1, a scorpion toxin with a canonical ... More...	nmrlearner	NMR pictures	0	07-23-2013 08:49 AM
[Question from NMRWiki Q&A forum] How to implement phase cycles into Bruker pulse sequences How to implement phase cycles into Bruker pulse sequences Hi, I have been trying to implement some pulse sequences from literature into Bruker format. However, when it comes to the phase cycling part, I have to struggle a lot to get them to work. I know phase cycling can be implemented in various ways. Can someone give me some tips/insights on how to implement them in Bruker format in particular? Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	04-12-2013 11:44 PM
[NMR paper] NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking t NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains. Related Articles NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains. J Mol Biol. 2001 Sep 7;312(1):167-75 Authors: Hanaoka S, Nagadoi A, Yoshimura S, Aimoto S, Li B, de Lange T, Nishimura Y Mammalian telomeres are composed of long tandem arrays of double-stranded telomeric TTAGGG repeats associated with...	nmrlearner	Journal club	0	11-19-2010 08:44 PM
[NMR paper] Direct identification of NH...N hydrogen bonds in non-canonical base pairs of RNA by Direct identification of NH...N hydrogen bonds in non-canonical base pairs of RNA by NMR spectroscopy. Related Articles Direct identification of NH...N hydrogen bonds in non-canonical base pairs of RNA by NMR spectroscopy. Nucleic Acids Res. 1999 Aug 1;27(15):3104-10 Authors: Wöhnert J, Dingley AJ, Stoldt M, Görlach M, Grzesiek S, Brown LR It is shown that the recently developed quantitative J(NN)HNN-COSY experiment can be used for the direct identification of hydrogen bonds in non-canonical base pairs in RNA. Scalar(2h)J(NN)couplings across...	nmrlearner	Journal club	0	11-18-2010 08:31 PM
[NMR paper] Multiple cycles of global unfolding of GroEL-bound cyclophilin A evidenced by NMR. Multiple cycles of global unfolding of GroEL-bound cyclophilin A evidenced by NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Multiple cycles of global unfolding of GroEL-bound cyclophilin A evidenced by NMR. J Mol Biol. 1997 Sep 5;271(5):803-18 Authors: Nieba-Axmann SE, Ottiger M, WÃ¼thrich K, PlÃ¼ckthun A GroE, the chaperonin system of Escherichia coli, prevents the aggregation of partially folded or misfolded proteins by complexing them in a form competent for...	nmrlearner	Journal club	0	08-22-2010 05:08 PM
[NMR paper] The pKa of the general acid/base carboxyl group of a glycosidase cycles during cataly The pKa of the general acid/base carboxyl group of a glycosidase cycles during catalysis: a 13C-NMR study of bacillus circulans xylanase. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles The pKa of the general acid/base carboxyl group of a glycosidase cycles during catalysis: a 13C-NMR study of bacillus circulans xylanase. Biochemistry. 1996 Aug 6;35(31):9958-66 Authors: McIntosh LP, Hand G, Johnson PE, Joshi MD, KÃ¶rner M, Plesniak LA, Ziser L, Wakarchuk WW, Withers SG The 20 kDa...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off