[Question from NMRWiki Q&A forum] Learning pulse programming
Learning pulse programming
I'm a grad student with no prior experience in pulse programming. Currently I work in rodent MRI. I want to be able to implement some of the sequences I read about in papers and I'd like to know the best way to get started with pulse programming. I read the manual parts on pulse programming and method programming. While the cover the all the syntax,etc. really well they don't really provide any general concepts. For instance, the manual will tell you how to set a delay (e.g. d0 or 1.2u) but not why you should use a particular delay, power level, etc.
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nmrlearner
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05-13-2011 07:41 AM
[Question from NMRWiki Q&A forum] CT COSY pulse sequence programming
CT COSY pulse sequence programming
Hi,
I want to make a CT-COSY pulse sequence. But I'm bother by incremented delay. When I type in the BaseLevelRelation.h this:
IN=-INand add in the microprogram the delay before and after my pi pulse,it didn't work... It seems like it calculate the d28 delay from the IN28 increment, but doesn't want to apply this delay in the pulse sequence....Any idea ? Perhaps it's about some incrementation declaration or something like that ?
nmrlearner
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05-04-2011 05:33 PM
[NMR paper] Reconsidering complete search algorithms for protein backbone NMR assignment.
Reconsidering complete search algorithms for protein backbone NMR assignment.
Related Articles Reconsidering complete search algorithms for protein backbone NMR assignment.
Bioinformatics. 2005 Sep 1;21 Suppl 2:ii230-6
Authors: Vitek O, Bailey-Kellogg C, Craig B, Kuliniewicz P, Vitek J
MOTIVATION: Nuclear magnetic resonance (NMR) spectroscopy is widely used to determine and analyze protein structures. An essential step in NMR studies is determining the backbone resonance assignment, which maps individual atoms to experimentally measured...
nmrlearner
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12-01-2010 06:56 PM
[NMR paper] Sequential assignment of 2D-NMR spectra of proteins using genetic algorithms.
Sequential assignment of 2D-NMR spectra of proteins using genetic algorithms.
Related Articles Sequential assignment of 2D-NMR spectra of proteins using genetic algorithms.
J Chem Inf Comput Sci. 1993 Mar-Apr;33(2):245-51
Authors: Wehrens R, Lucasius C, Buydens L, Kateman G
The application of genetic algorithms to the problem of the sequential assignment of two-dimensional protein NMR spectra is discussed. The problem is heavily underconstrained since in most cases more patterns are available than amino acid positions, and uncertainties may...
nmrlearner
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08-21-2010 11:53 PM
[NMR paper] Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and a
Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and application to phoratoxin B.
Related Articles Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and application to phoratoxin B.
J Biomol NMR. 1991 May;1(1):23-47
Authors: Kleywegt GJ, Boelens R, Cox M, Llinás M, Kaptein R
A suite of computer programs (CLAIRE) is described which can be of assistance in the process of assigning 2D 1H NMR spectra of proteins. The programs embody a software implementation of the sequential assignment...
nmrlearner
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08-21-2010 11:16 PM
[Stan NMR blog] Books about Web Issues and Web Programming
Books about Web Issues and Web Programming
BOOKS LIST: A large and growing collection with links to Amazon.
More...
nmrlearner
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08-21-2010 06:14 PM
[Stan NMR blog] New EPR (ESR) books
New EPR (ESR) books
Three new Electron Spin Resonance books have just left the presses
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Books about Software, Programming, Algorithms, ...
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