KPWU blog Agilent?s VnmrJ 3.2 implements NMRPipe

		BioNMR > NMR community > News from NMR blogs
[KPWU blog] Agilent?s VnmrJ 3.2 implements NMRPipe

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-18-2011, 09:25 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Agilent?s VnmrJ 3.2 implements NMRPipe

Agilent?s VnmrJ 3.2 implements NMRPipe

As just announced at the Agilent’s web blog “SPINSIGHTS”, the coming VnmrJ 3.2 will provide complete implementation of NMRPipe. This will be very useful for most of biomolecular NMR users. *I always run NMRPipe on the console linux to preview the 2D HSQC or some 3D data and direct compare to some data I already [...]

Go to KPWU blog to read complete post.

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Interview with Agilent NMR VP Interview with Agilent NMR VP A Life in NMR: Interview with Regina Schuck, VP and General Manager of Agilent Research Products Division More...	nmrlearner	General	0	12-08-2011 11:54 PM
Advanced Data ProcessingâImplementing NMRPipe Within VnmrJ Advanced Data ProcessingâImplementing NMRPipe Within VnmrJ Agilent is implementing a GUI for NMRPipe processing directly from VNMRJ! More...	nmrlearner	General	0	10-26-2011 11:27 PM
[NMR900 blog] 1 GHz NMR system from Agilent 1 GHz NMR system from Agilent Agilent is well-prepared for upcoming 52nd ENC Conference, among several interesting NMR product announcements there is a 1 GHz NMR system ! Read the full press release from Agilent (external link). https://blogger.googleusercontent.com/tracker/8663203727601106205-8313799067402229537?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	04-09-2011 12:17 AM
[KPWU blog] Agilent?s NMR blog Agilent?s NMR blog Two weeks, I found Agilent’s NMR blog to introduce their design, concept and technology. This is a quite new website created by Agilent. Perhaps it is one of the new strategy to interact with most of young NMR users after Agilent acquired Varian in 2009. The website address is :http://www.spinsights.net/nmr-blog/. Hope the Agilent scientists can http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=295&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	04-02-2011 09:44 AM
[NMRwiki tweet] nmrwiki: How to fix this shimdriver error in vnmrj? #nmrhttp://qa.nmrwiki.org/question/232/problems-about-vnmrj-23a-2-shimdriver nmrwiki: How to fix this shimdriver error in vnmrj? #nmrhttp://qa.nmrwiki.org/question/232/problems-about-vnmrj-23a-2-shimdriver nmrwiki: How to fix this shimdriver error in vnmrj? #nmrhttp://qa.nmrwiki.org/question/232/problems-about-vnmrj-23a-2-shimdriver Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	03-04-2011 02:12 AM
[NMRwiki tweet] nmrwiki: How to change thickness of #NMR lines in VNMRJ?http://qa.nmrwiki.org/question/230/problems-about-vnmrj-23a3-fid-display-style nmrwiki: How to change thickness of #NMR lines in VNMRJ?http://qa.nmrwiki.org/question/230/problems-about-vnmrj-23a3-fid-display-style nmrwiki: How to change thickness of #NMR lines in VNMRJ?http://qa.nmrwiki.org/question/230/problems-about-vnmrj-23a3-fid-display-style Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	03-04-2011 02:12 AM
[NMRwiki tweet] nmrwiki: How to turn ON fid for shimming in VNMRJ? #nmrhttp://qa.nmrwiki.org/question/231/problems-about-vnmrj-23a-1shimming nmrwiki: How to turn ON fid for shimming in VNMRJ? #nmrhttp://qa.nmrwiki.org/question/231/problems-about-vnmrj-23a-1shimming nmrwiki: How to turn ON fid for shimming in VNMRJ? #nmrhttp://qa.nmrwiki.org/question/231/problems-about-vnmrj-23a-1shimming Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	03-04-2011 02:12 AM
[NMRwiki tweet] nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file nmrwiki: How to solve VNMRJ "No data in data file" problem? #nmr @Agilenthttp://qa.nmrwiki.org/question/220/vnmrj-no-data-in-data-file Source: NMRWiki tweets	nmrlearner	Twitter NMR	0	01-18-2011 02:44 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off