BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from NMR blogs
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-24-2014, 05:02 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default 2H NMR on a Bruker AVANCE Spectrometer

2H NMR on a Bruker AVANCE Spectrometer

The acquisition of high resolution 2H NMR data on a Bruker AVANCE spectrometer is done differently than that for 13C, 31P or any other heteronucleus. Most heteronuclear data are collected using a broadband amplifier, a broadband preamplifier and the high sensitivity coil of a broadband probe. This configuration cannot be used to collect 2H NMR data as the broadband preamplifier on AVANCE spectrometers has a built in 2H stop filter. There are at least two options for collecting 2H NMR data on a Bruker AVANCE spectrometer using a broadband NMR probe: one, requiring no re-cabling with low sensitivity and another, requiring some re-cabling with high sensitivity. The low sensitivity option uses the 20W 2H amplifier (normally used for 2H gradient shimming), the lock preamplifier and the 2H lock coil of the probe. Although convenient, since no re-cabling or reconfiguration is necessary, the sensitivity is low because the lock coil often has a very low filling factor and the 20W 2H amplifier has limited power. This method can be used to observe 2H labelled compounds at high concentration where sensitivity is not an issue. The high sensitivity option uses the higher power (300 W in my case) broadband amplifier, the lock preamplifier and the broadband coil of the probe tuned to 2H. This method requires a bit of re-cabling and re-configuration but has a large sensitivity advantage. It is suitable for cases where the deuterium is in low concentrations where sensitivity is an issue, for example to observe 2H at natural abundance or very low concentrations of 2H labelled compounds. The figure below shows an example of both cases on a 500 MHz AVANCE spectrometer using a triple resonance (BB, 1H, 31P) probe. The sample is neat tap water where the 2H is at natural abundance (0.015 %). The spectra were collected with 90° pulses, 2 sec recycle delays, 1.8 sec acquisition times and 128 scans. The pulse programs used were zg2h and zg for the low and high sensitivity cases, respectively.


For this NMR probe, there is a 26 times gain in signal-to-noise ratio between the two methods. This will depend strongly the type of NMR probe used as the filling factor of the lock coil compared to the broadband coil must be taken into account.


Source: University of Ottawa NMR Facility Blog
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR images] Bruker Avance 700MHz
http://sbl.salk.edu/blueprint/img/nmr-small.jpg 25/04/2014 10:27:29 PM GMT Bruker Avance 700MHz More...
nmrlearner NMR pictures 0 05-09-2014 06:30 AM
[NMR images] Nuclear magnetic resonance spectrometer (NMR) - Avance™III HD
http://img.directindustry.com/images_di/photo-g/nuclear-magnetic-resonance-spectrometers-nmr-61605-4955327.jpg 18/04/2014 1:36:11 PM GMT Nuclear magnetic resonance spectrometer (NMR) - Avance™III HD More...
nmrlearner NMR pictures 0 04-18-2014 01:35 PM
[Question from NMRWiki Q&A forum] RGA setting too high on Bruker Avance 300
RGA setting too high on Bruker Avance 300 I'm using Bruker Avance 300 spectrometer (Topspin processing software). When using "RGA" GR value jumps up to 3000 and more not depending on sample concentration. When RG is set manually spectra 1H spectra still looks little distorted. What could be causing this error???How it can be fixed? Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 04-11-2014 02:51 PM
[NMR images] bruker ? avance iii 950 system 1h ?? ??? 950mhz ?? ? ...
http://www.protein.osaka-u.ac.jp/biophys/img/950nmr.jpg 20/03/2014 12:45:23 PM GMT bruker ? avance iii 950 system 1h ?? ??? 950mhz ?? ? ... More...
nmrlearner NMR pictures 0 03-20-2014 12:44 PM
Installation manual for Bruker Avance NMR? Any model
I am interested to have a look at installation procedure of a typical Bruker preferably Avance NMRs. If anyone has a copy or knows where to get a copy please PM me. ;)
Agoo NMR Questions and Answers 0 09-10-2013 02:39 AM
quenched Bruker Avance 300 magnet recovery
Our Bruker Avance 300 quenched a few years ago and was sitting there with no helium inside. Now we need to get it up and running and I have to do magnet recovery myself. I have already purchase a power supply for this purpose. I need "installation of a NMR from beginning" or a manual about "how to recover quenched magnet" or any document or video which may help. My email is ag_oo7@yahoo.com. thx
Agoo NMR Questions and Answers 0 09-09-2013 05:35 PM
[Question from NMRWiki Q&A forum] Bruker Avance pulse sequences - where to find if not in TopSpin?
Bruker Avance pulse sequences - where to find if not in TopSpin? I used to use Varian Inova systems with BioPack all the time, and now I'm using a Bruker Avance-III system geared for Chemistry, not biology. It's driving me crazy that I can't find the pulse sequences I'm used to using! Right now, I'd like to use a NOESY with WET water suppression, and I can't find one in the default set that came with the software. Where do I go for relatively simple pulse sequences for Avance systems? I see Bruker pulse sequences for advanced experiments on Ad Bax's site, at NMRFAM, and NMRWiki, but...
nmrlearner News from other NMR forums 0 08-22-2010 02:30 AM
[U. of Ottawa NMR Facility Blog] Heat Dissipation in Bruker AVANCE Spectrometers
Heat Dissipation in Bruker AVANCE Spectrometers It is very important that an NMR spectrometer operate within a fixed temperature range. To control the temperature, many units within the console are equipped with cooling fans which must be kept in good working order. Failure to do so will shorten the life of the spectrometer and cause instability or malfunctions. In the Bruker AVANCE series of spectrometers, the SGU (Signal Generation Unit) boards are particularly sensitive to temperature. Each SGU houses a DDS (Direct Digital Synthesizer) containing numerically controlled oscillators which...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 03:50 AM.


Map